Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 3.4e-165 585.1 337 100.0
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.6e-130 469.9 338 85.2
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 5.7e-128 461.5 289 86.5
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.3e-108 397.1 290 76.2
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.9e-102 376.7 290 73.8
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 2.6e-96 356.3 288 71.2
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.4e-96 355.9 313 68.7
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.0e-93 345.1 323 65.0
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.3e-91 339.0 279 71.0
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 7.1e-86 321.6 293 69.3
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 5.1e-84 315.5 246 74.0
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 4.7e-82 308.9 293 65.2
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.7e-77 293.1 242 72.3
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.8e-74 283.1 308 57.8
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.5e-64 250.8 294 58.2
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.3e-62 241.5 269 56.1
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.1e-57 228.0 273 52.4
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 2.4e-57 226.9 267 54.7
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 9.0e-57 224.9 296 54.1
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-56 224.2 276 52.2
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.5e-56 224.2 165 76.4
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 1.3e-55 221.1 280 50.4
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 4.2e-54 216.1 276 51.4
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 4.6e-53 212.6 269 51.7
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 1.8e-52 210.7 284 50.7
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 1.8e-52 210.7 294 50.0
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 3.0e-52 209.9 273 50.9
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 3.9e-52 209.5 269 52.0
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 8.7e-52 208.4 296 49.7
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 1.9e-51 207.2 285 50.9
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 2.1e-50 203.8 318 44.3
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.1e-50 203.8 217 60.8
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.4e-49 201.1 275 50.9
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.4e-49 201.1 249 51.0
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 9.0e-49 198.4 280 51.8
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-48 197.6 288 47.6
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 2.6e-48 196.8 277 49.1
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 1.3e-47 194.5 236 51.7
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 2.2e-47 193.7 256 48.0
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 2.9e-47 193.4 280 48.2
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 2.5e-46 190.3 268 46.3
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 2.5e-46 190.3 268 46.3
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 4.2e-46 189.5 268 46.3
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 1.0e-44 184.9 266 45.5
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 1.0e-44 184.9 266 45.5
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 6.7e-44 182.2 256 48.4
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 6.7e-44 182.2 148 73.0
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 2.2e-42 177.2 267 46.4
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.5e-39 165.2 252 48.0
AT5G40070 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.9e-33 145.6 248 46.0
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 1.2e-32 144.8 196 45.9
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.2e-32 144.8 205 43.9
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 3.2e-30 136.7 220 44.5
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.2e-30 135.6 194 43.3
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 9.4e-30 135.2 203 44.8
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 6.1e-29 132.5 289 37.7
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 6.1e-29 132.5 289 37.7
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 6.7e-28 129.0 201 46.3
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 6.7e-28 129.0 254 37.8
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.3e-26 124.8 191 39.8
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 2.8e-26 123.6 213 43.2
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 8.2e-26 122.1 92 70.7
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 1.4e-25 121.3 246 38.2
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.4e-25 121.3 183 45.4
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 3.1e-25 120.2 260 37.3
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 3.1e-25 120.2 260 37.3
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 3.1e-25 120.2 260 37.3
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 1.7e-23 114.4 182 41.8
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 1.7e-23 114.4 218 40.4
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-23 114.4 191 42.4
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 2.2e-23 114.0 313 34.5
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 2.2e-23 114.0 313 34.5
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.1e-22 111.7 69 76.8
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 2.5e-22 110.5 248 37.1
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 6.1e-21 105.9 146 47.3
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 3.0e-20 103.6 167 41.3
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 2.8e-18 97.1 166 42.8
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 2.8e-18 97.1 188 42.0
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.8e-18 97.1 176 39.8
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 8.2e-18 95.5 171 36.8
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 9.1e-17 92.0 217 35.5
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.0e-16 90.9 220 34.1
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.0e-16 90.9 171 35.7
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 2.7e-16 90.5 113 49.6
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 2.7e-16 90.5 213 32.9
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 3.5e-16 90.1 277 30.7
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 5.9e-16 89.4 237 32.9
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 7.7e-16 89.0 111 49.5
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.3e-15 88.2 67 67.2
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.3e-15 88.2 217 38.2
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.3e-15 88.2 205 34.6
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.3e-15 88.2 140 40.0
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.7e-15 87.8 71 64.8
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 1.7e-15 87.8 199 36.2
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.0e-15 86.3 185 36.8
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 8.5e-15 85.5 238 31.9
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.1e-14 85.1 201 36.3
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 1.1e-14 85.1 193 34.7
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 1.5e-14 84.7 267 31.8
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 3.2e-14 83.6 234 33.8
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.2e-14 83.2 234 32.1
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.5e-14 82.8 215 35.8
BcaNung06357 Brassica carinata HOM05D007946 ORTHO05D004325 9.4e-14 82.0 189 36.0
BolC6t35593H Brassica oleracea HOM05D007946 ORTHO05D004325 9.4e-14 82.0 189 36.0
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 2.7e-13 80.5 211 35.5
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 3.6e-13 80.1 256 32.0
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 3.6e-13 80.1 256 32.0
AT5G27090 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.0e-12 77.0 63 63.5
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 4.0e-12 76.6 205 32.7
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.2e-12 76.3 149 34.2
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 6.8e-12 75.9 208 32.7
BcaC08g46035 Brassica carinata HOM05D007946 ORTHO05D004325 1.2e-11 75.1 241 32.4
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 2.6e-11 73.9 198 34.8
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 2.6e-11 73.9 163 31.3
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.6e-11 73.9 128 37.5
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.6e-11 73.9 128 37.5
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.6e-11 73.9 128 37.5
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 3.4e-11 73.6 178 34.8
BolC6t35452H Brassica oleracea HOM05D007946 ORTHO05D004325 5.7e-11 72.8 201 32.8
C06p38290 Brassica napus HOM05D007946 ORTHO05D004325 9.8e-11 72.0 79 55.7
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 9.8e-11 72.0 198 34.8
BolC6t38928H Brassica oleracea HOM05D007946 ORTHO05D004325 9.8e-11 72.0 79 55.7
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 1.3e-10 71.6 92 44.6
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 1.3e-10 71.6 207 33.3
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 1.3e-10 71.6 148 33.8
A07p32380 Brassica napus HOM05D007946 ORTHO05D004325 2.8e-10 70.5 213 32.4
BraA07t30861Z Brassica rapa HOM05D007946 ORTHO05D004325 2.8e-10 70.5 213 32.4
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 3.7e-10 70.1 217 30.4
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 4.8e-10 69.7 170 29.4
BcaB07g33730 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-10 69.7 231 29.9
BcaB07g33784 Brassica carinata HOM05D007946 ORTHO05D004325 4.8e-10 69.7 231 29.9
BcaB04g17058 Brassica carinata HOM05D007946 ORTHO05D004325 1.1e-09 68.6 234 30.3
BcaNung06274 Brassica carinata HOM05D007946 ORTHO05D004325 1.1e-09 68.6 209 30.1
BraA06t23637Z Brassica rapa HOM05D007946 ORTHO05D004325 1.4e-09 68.2 228 29.4
A06p04330 Brassica napus HOM05D007946 ORTHO05D004325 2.4e-09 67.4 225 29.3
AL7G46070 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 4.1e-09 66.6 48 66.7
Aa31LG8G6660 Aethionema arabicum HOM05D006887 ORTHO05D004325 5.4e-09 66.2 121 37.2
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.4e-09 66.2 129 32.6
A07p06920 Brassica napus HOM05D007946 ORTHO05D004325 7.0e-09 65.9 228 28.5
BraA07t28483Z Brassica rapa HOM05D007946 ORTHO05D004325 7.0e-09 65.9 228 28.5
THA.LOC104806918 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 9.1e-09 65.5 134 35.1
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.6e-08 64.7 133 31.6
BcaC08g43062 Brassica carinata HOM05D007946 ORTHO05D004325 2.7e-08 63.9 229 28.8
C06p03210 Brassica napus HOM05D007946 ORTHO05D004325 2.7e-08 63.9 229 28.8
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.7e-08 63.9 138 29.7
A06p04090 Brassica napus HOM05D007946 ORTHO05D004325 3.5e-08 63.5 211 29.9
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.5e-08 63.5 137 29.9
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 3.5e-08 63.5 146 32.2
BcaC07g39831 Brassica carinata HOM05D007946 ORTHO05D004325 4.5e-08 63.2 210 29.5
A08p14850 Brassica napus HOM05D007946 ORTHO05D004325 4.5e-08 63.2 218 30.7
PSO541G0906 Papaver somniferum HOM05D000307 ORTHO05D000166 4.5e-08 63.2 137 33.6
BolC6t35453H Brassica oleracea HOM05D007946 ORTHO05D004325 5.9e-08 62.8 229 28.8
MBI16_g16371_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 5.9e-08 62.8 138 29.7
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 7.7e-08 62.4 82 41.5
BcaB07g33736 Brassica carinata HOM05D007946 ORTHO05D004325 1.3e-07 61.6 100 40.0
BolC6t35438H Brassica oleracea HOM05D007946 ORTHO05D004325 1.3e-07 61.6 103 38.8
CARHR112470 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.7e-07 61.2 197 31.0
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 1.7e-07 61.2 56 44.6
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 2.2e-07 60.8 127 28.3
Aa31LG8G6650 Aethionema arabicum HOM05D006887 ORTHO05D004325 2.9e-07 60.5 206 29.1
Ca_15044_v3 Cicer arietinum L. HOM05D000307 ORTHO05D000166 5.0e-07 59.7 139 33.1
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 5.0e-07 59.7 195 27.2
Oeu029235.1 Olea europaea HOM05D011412 ORTHO05D009969 5.0e-07 59.7 143 29.4
ATR0075G005 Amborella trichopoda HOM05D006887 ORTHO05D004325 6.5e-07 59.3 129 29.5
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 6.5e-07 59.3 135 31.1
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 6.5e-07 59.3 138 28.3
Actinidia23430 Actinidia chinensis HOM05D006887 ORTHO05D009969 8.5e-07 58.9 59 47.5
BraA08t33469Z Brassica rapa HOM05D007946 ORTHO05D004325 8.5e-07 58.9 164 30.5
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 8.5e-07 58.9 147 25.9
AUR62013084 Chenopodium quinoa HOM05D013707 ORTHO05D000166 1.1e-06 58.5 124 33.9
PSO675G0191 Papaver somniferum HOM05D000307 ORTHO05D000166 1.1e-06 58.5 182 28.6
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.5e-06 58.2 48 56.2
DCAR_007526 Daucus carota HOM05D009853 ORTHO05D009969 1.5e-06 58.2 70 38.6
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 1.5e-06 58.2 127 33.1
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 1.5e-06 58.2 52 50.0
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 1.9e-06 57.8 161 28.0
Nn4g24661 Nelumbo nucifera HOM05D000307 ORTHO05D000166 1.9e-06 57.8 149 30.9
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 2.5e-06 57.4 147 23.8
Gohir.D11G185000 Gossypium hirsutum HOM05D000307 ORTHO05D000166 3.2e-06 57.0 161 26.1
Gorai.007G196600 Gossypium raimondii HOM05D000307 ORTHO05D000166 3.2e-06 57.0 161 26.1
TAR381G0994 Trochodendron aralioides HOM05D000307 ORTHO05D000166 3.2e-06 57.0 160 25.6
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 4.2e-06 56.6 144 28.5
Aqoxy5G00368 Aquilegia oxysepala HOM05D000307 ORTHO05D000166 5.5e-06 56.2 272 25.0
CSS0019303 Camellia sinensis var. sinensis HOM05D009853 ORTHO05D009969 5.5e-06 56.2 92 37.0
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 5.5e-06 56.2 138 29.7
Peaxi162Scf00011g00077 Petunia axillaris HOM05D009853 ORTHO05D009969 5.5e-06 56.2 60 43.3
DCAR_031306 Daucus carota HOM05D000307 ORTHO05D000166 7.2e-06 55.8 141 28.4
TWI38G1011 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 7.2e-06 55.8 291 24.1
BraA09t40264Z Brassica rapa HOM05D007946 ORTHO05D004325 9.5e-06 55.5 185 30.8
Nn3g20912 Nelumbo nucifera HOM05D016285 ORTHO05D000166 9.5e-06 55.5 149 29.5
Oeu034504.1 Olea europaea HOM05D011412 ORTHO05D009969 9.5e-06 55.5 113 36.3


User provided reference genes

Program Settings