Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.5e-32 142.1 65 100.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-27 125.9 61 93.4
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-27 125.9 61 93.4
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-27 125.9 61 93.4
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-27 125.9 61 93.4
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-27 125.9 61 93.4
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-27 125.9 61 93.4
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.4e-27 125.6 61 93.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 2.4e-27 124.8 61 91.8
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 7.1e-27 123.2 61 90.2
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 9.3e-27 122.9 61 90.2
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 9.3e-27 122.9 61 90.2
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 9.3e-27 122.9 61 90.2
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 9.3e-27 122.9 61 90.2
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 3.5e-26 120.9 61 85.2
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 4.6e-26 120.6 61 86.9
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 6.0e-26 120.2 61 86.9
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 6.0e-26 120.2 61 86.9
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 6.0e-26 120.2 61 86.9
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 6.0e-26 120.2 61 86.9
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.0e-26 120.2 61 86.9
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 7.9e-26 119.8 61 83.6
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.0e-25 119.4 61 83.6
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.0e-25 119.4 61 83.6
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.0e-25 119.4 61 83.6
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 1.3e-25 119.0 61 83.6
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.8e-25 118.6 61 83.6
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.8e-25 118.6 61 83.6
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 82.0
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 82.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 82.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 82.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 83.6
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 83.6
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.3e-25 118.2 61 82.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 3.0e-25 117.9 61 80.3
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 3.9e-25 117.5 61 82.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.9e-25 117.5 61 82.0
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 80.3
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 80.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 83.6
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 80.3
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 80.3
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 82.0
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 5.1e-25 117.1 61 80.3
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 6.7e-25 116.7 61 82.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 6.7e-25 116.7 61 80.3
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 6.7e-25 116.7 61 82.0
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 6.7e-25 116.7 61 80.3
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 85.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 8.7e-25 116.3 61 80.3
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 78.7
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 82.0
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 82.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 82.0
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 82.0
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 82.0
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 80.3
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.1e-24 115.9 61 82.0
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.5e-24 115.5 61 82.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.5e-24 115.5 61 78.7
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.5e-24 115.5 61 78.7
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.9e-24 115.2 61 78.7
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.5e-24 114.8 61 78.7
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 2.5e-24 114.8 61 77.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.5e-24 114.8 61 80.3
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.5e-24 114.8 61 78.7
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.3e-24 114.4 61 78.7
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 3.3e-24 114.4 61 78.7
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 4.3e-24 114.0 61 80.3
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.6e-24 113.6 61 78.7
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 5.6e-24 113.6 61 77.0
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 5.6e-24 113.6 61 78.7
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 7.4e-24 113.2 61 75.4
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 7.4e-24 113.2 61 80.3
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.6e-23 112.1 61 78.7
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.1e-23 111.7 61 77.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.1e-23 111.7 61 78.7
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.8e-23 111.3 61 75.4
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.7e-23 110.9 61 77.0
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.8e-23 110.5 61 75.4
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 6.2e-23 110.2 61 77.0
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 6.2e-23 110.2 61 77.0
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 8.1e-23 109.8 59 83.1
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 8.1e-23 109.8 59 83.1
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 8.1e-23 109.8 61 73.8
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.4e-22 109.0 61 73.8
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.4e-22 109.0 61 75.4
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.8e-22 108.6 61 73.8
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 3.1e-22 107.8 81 63.0
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.9e-22 106.7 61 77.0
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 9.0e-22 106.3 58 81.0
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 9.0e-22 106.3 58 81.0
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 9.0e-22 106.3 58 81.0
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.2e-21 105.9 61 72.1
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.0e-21 105.1 61 68.9
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.6e-21 104.8 80 61.2
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 3.4e-21 104.4 50 94.0
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 3.4e-21 104.4 61 77.0
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.4e-21 104.4 50 94.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.9e-20 101.3 50 90.0
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.4e-19 99.0 61 65.6
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.4e-19 99.0 61 65.6
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.5e-19 98.2 58 74.1
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.5e-19 98.2 58 74.1
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.2e-19 97.8 61 63.9
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 7.1e-19 96.7 61 63.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.6e-18 95.5 58 70.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 6.0e-18 93.6 50 78.0
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 6.0e-18 93.6 50 76.0
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.3e-17 92.4 61 60.7
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.8e-17 92.0 50 74.0
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.8e-17 92.0 50 74.0
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.3e-17 91.7 57 71.9
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 5.1e-17 90.5 61 62.3
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.7e-17 90.1 57 70.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 8.7e-17 89.7 49 81.6
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 8.7e-17 89.7 50 76.0
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.3e-16 87.8 75 61.3
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 4.3e-16 87.4 61 62.3
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 5.7e-16 87.0 61 63.9
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.6e-15 85.5 74 56.8
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.6e-15 85.5 61 57.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.1e-15 85.1 59 61.0
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.1e-14 82.8 58 62.1
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 6.5e-12 73.6 54 53.7
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.9e-11 72.0 61 49.2
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 3.5e-10 67.8 58 44.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.3e-09 65.1 71 42.3
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 3.3e-08 61.2 29 93.1
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 4.3e-08 60.8 40 62.5
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 9.7e-08 59.7 61 47.5
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.4e-06 55.1 54 40.7
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 3.1e-06 54.7 27 88.9


User provided reference genes

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