Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G21820 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 7.3e-14 79.3 40 100.0
AT4G30330 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 7.3e-14 79.3 40 100.0
Carub.0007s1027 Capsella rubella HOM05D003522 ORTHO05D003993 7.3e-14 79.3 40 100.0
Aa31LG8G15860 Aethionema arabicum HOM05D003522 ORTHO05D003993 2.1e-13 77.8 40 97.5
Pp3c14_15210 Physcomitrium patens HOM05D003522 ORTHO05D003993 3.6e-13 77.0 40 95.0
Pp3c2_10270 Physcomitrium patens HOM05D003522 ORTHO05D003993 3.6e-13 77.0 40 95.0
HanXRQChr10g0311551 Helianthus annuus HOM05D003522 ORTHO05D003993 6.1e-13 76.3 40 97.5
AL3G53200 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 95.0
AT2G18740 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 95.0
BcaB08g34822 Brassica carinata HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 95.0
Carub.0003s3301 Capsella rubella HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 95.0
Ciclev10027494m.g Citrus clementina HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 92.5
Thhalv10022941m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 95.0
Sp3g32240 Schrenkiella parvula HOM05D003522 ORTHO05D003993 8.0e-13 75.9 40 95.0
Sp7g28200 Schrenkiella parvula HOM05D003522 ORTHO05D003993 1.0e-12 75.5 40 92.5
Aa31LG2G20200 Aethionema arabicum HOM05D001097 ORTHO05D001009 1.8e-12 74.7 40 95.0
Prupe.4G278600 Prunus persica HOM05D003522 ORTHO05D003993 1.8e-12 74.7 40 95.0
Nn2g14329 Nelumbo nucifera HOM05D003522 ORTHO05D003993 4.0e-12 73.6 40 90.0
Pp3c17_6070 Physcomitrium patens HOM05D003522 ORTHO05D003993 4.0e-12 73.6 40 90.0
THA.LOC104803508 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 4.0e-12 73.6 40 92.5
Ciclev10010045m.g Citrus clementina HOM05D003522 ORTHO05D003993 6.8e-12 72.8 40 90.0
MD13G1262900 Malus domestica HOM05D003522 ORTHO05D003993 6.8e-12 72.8 40 92.5
Mapoly0127s0039 Marchantia polymorpha HOM05D003522 ORTHO05D003993 6.8e-12 72.8 40 85.0
Prupe.1G094500 Prunus persica HOM05D003522 ORTHO05D003993 6.8e-12 72.8 40 92.5
TWI60G1574 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 6.8e-12 72.8 38 92.1
Eucgr.J03147 Eucalyptus grandis HOM05D003522 ORTHO05D003993 8.9e-12 72.4 40 87.5
Eucgr.L02749 Eucalyptus grandis HOM05D003522 ORTHO05D003993 8.9e-12 72.4 40 87.5
PGR044G2568 Punica granatum HOM05D003522 ORTHO05D003993 8.9e-12 72.4 40 90.0
Thecc.06G016400 Theobroma cacao HOM05D003522 ORTHO05D003993 8.9e-12 72.4 40 90.0
CSS0025026 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 87.5
CSS0040441 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 87.5
CARHR109330 Cardamine hirsuta HOM05D003522 ORTHO05D003993 1.2e-11 72.0 38 94.7
AUR62017953 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 87.5
AUR62038785 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 87.5
DCAR_014711 Daucus carota HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 90.0
DCAR_017954 Daucus carota HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 90.0
Glyma.17G067100 Glycine max HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 90.0
MBI16_g00671_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 85.0
Manes.05G188200 Manihot esculenta HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 87.5
Manes.06G037450 Manihot esculenta HOM05D003522 ORTHO05D003993 1.2e-11 72.0 40 87.5
TWI15G0209 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 1.2e-11 72.0 38 89.5
CDE01G0803 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 1.5e-11 71.6 40 87.5
FvH4_7g02280 Fragaria vesca HOM05D003522 ORTHO05D003993 1.5e-11 71.6 40 90.0
RcHm_v2.0_Chr1g0319581 Rosa chinensis HOM05D003522 ORTHO05D003993 1.5e-11 71.6 40 90.0
RcHm_v2.0_Chr4g0403921 Rosa chinensis HOM05D003522 ORTHO05D003993 1.5e-11 71.6 40 90.0
Dinv37803 Davidia involucrata HOM05D003522 ORTHO05D003993 2.0e-11 71.2 40 90.0
Duzib150G0286 Durio zibethinus HOM05D003522 ORTHO05D003993 2.0e-11 71.2 40 87.5
Duzib168G1637 Durio zibethinus HOM05D003522 ORTHO05D003993 2.0e-11 71.2 40 87.5
ECA234G0975 Erigeron canadensis HOM05D003522 ORTHO05D003993 2.0e-11 71.2 42 92.9
Migut.J01787 Erythranthe guttata HOM05D003522 ORTHO05D003993 2.0e-11 71.2 40 87.5
SHI02961 Sapria himalayana HOM05D003522 ORTHO05D003993 2.0e-11 71.2 36 94.4
SMO347G0208 Selaginella moellendorffii HOM05D003522 ORTHO05D003993 2.0e-11 71.2 40 85.0
TAR626G0766 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.0e-11 71.2 40 85.0
A06p33110 Brassica napus HOM05D003522 ORTHO05D003993 2.6e-11 70.9 36 97.2
C03p59350 Brassica napus HOM05D003522 ORTHO05D003993 2.6e-11 70.9 36 97.2
C09p14220 Brassica napus HOM05D000306 ORTHO05D000410 2.6e-11 70.9 36 97.2
BolC3t18199H Brassica oleracea HOM05D003522 ORTHO05D003993 2.6e-11 70.9 36 97.2
BolC9t54322H Brassica oleracea HOM05D003522 ORTHO05D003993 2.6e-11 70.9 36 97.2
BraA06t26241Z Brassica rapa HOM05D003522 ORTHO05D003993 2.6e-11 70.9 36 97.2
Cpa.g.sc126.37 Carica papaya HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 87.5
MELO3C013179.2 Cucumis melo HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 85.0
MELO3C017504.2 Cucumis melo HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 85.0
Glyma.13G093400 Glycine max HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 87.5
Gohir.A08G234900 Gossypium hirsutum HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 85.0
Gohir.D08G255300 Gossypium hirsutum HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 85.0
Gorai.004G272400 Gossypium raimondii HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 85.0
Os02g0126700 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 87.5
TAR636G2407 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.6e-11 70.9 40 82.5
Actinidia21860 Actinidia chinensis HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
CSS0040204 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
CiPaw.07G188400 Carya illinoinensis HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
CiPaw.08G038400 Carya illinoinensis HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Ca_06194_v3 Cicer arietinum L. HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Glyma.04G208600 Glycine max HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Glyma.06G157100 Glycine max HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Lj5g0004975 Lotus japonicus HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Lalb_Chr13g0300421 Lupinus albus HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Nitab4.5_0000782g0190 Nicotiana tabacum HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Nitab4.5_0004612g0030 Nicotiana tabacum HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Psat6g014800 Pisum sativum HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
Psat6g015920 Pisum sativum HOM05D003522 ORTHO05D003993 3.4e-11 70.5 40 85.0
QL02p096594 Quercus lobata HOM05D003522 ORTHO05D003993 3.4e-11 70.5 39 84.6
Atru.chr12.835 Acer truncatum HOM05D003522 ORTHO05D003993 4.4e-11 70.1 40 85.0
arahy.Tifrunner.gnm1.ann1.Z89DQ4 Arachis hypogaea HOM05D003522 ORTHO05D003993 4.4e-11 70.1 40 85.0
Lalb_Chr12g0199151 Lupinus albus HOM05D003522 ORTHO05D003993 4.4e-11 70.1 40 85.0
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 4.4e-11 70.1 40 87.5
unitig_37.g12145 Utricularia gibba HOM05D003522 ORTHO05D003993 4.4e-11 70.1 40 87.5
Zm00001eb387950 Zea mays HOM05D003522 ORTHO05D003993 4.4e-11 70.1 40 82.5
MSTRG.19883 Avicennia marina HOM05D003522 ORTHO05D003993 5.7e-11 69.7 40 85.0
CDE12G0561 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 5.7e-11 69.7 40 85.0
Solyc03g098470.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 5.7e-11 69.7 40 85.0
Sopen03g029210 Solanum pennellii HOM05D003522 ORTHO05D003993 5.7e-11 69.7 40 85.0
THA.LOC104803931 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 5.7e-11 69.7 40 85.0
TWI63G0474 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 5.7e-11 69.7 38 89.5
unitig_92.g28119 Utricularia gibba HOM05D003522 ORTHO05D003993 5.7e-11 69.7 40 85.0
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 7.5e-11 69.3 39 84.6
Medtr2g104440 Medicago truncatula HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 82.5
Medtr5g072530 Medicago truncatula HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 82.5
Os08g0151400 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 82.5
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 85.0
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 85.0
Rhsim12G0214100 Rhododendron simsii HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 85.0
Sed0017254 Sechium edule HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 82.5
TPR.G34745 Trifolium pratense HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 82.5
Zm00001eb132910 Zea mays HOM05D003522 ORTHO05D003993 7.5e-11 69.3 40 82.5
Cc04_g00460 Coffea canephora HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 85.0
MBI08_g10604_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 82.5
Nitab4.5_0005074g0050 Nicotiana tabacum HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 82.5
PSO170G2534 Papaver somniferum HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 85.0
PSO782G3457 Papaver somniferum HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 85.0
Phvul.009G153200 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 85.0
GSVIVG01008301001 Vitis vinifera HOM05D003522 ORTHO05D003993 9.8e-11 68.9 40 82.5
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 85.0
CANSAT11G1348 Cannabis sativa HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
FAN12G1866 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 87.5
Lj4g0002134 Lotus japonicus HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
Oeu004017.1 Olea europaea HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
PSO063G7604 Papaver somniferum HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 85.0
Phvul.003G149400 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 82.5
Zm00001eb120030 Zea mays HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 80.0
Zm00001eb338420 Zea mays HOM05D003522 ORTHO05D003993 1.3e-10 68.6 40 80.0
ATR0763G200 Amborella trichopoda HOM05D003522 ORTHO05D003993 1.7e-10 68.2 40 80.0
FvH4_4g08420 Fragaria vesca HOM05D003522 ORTHO05D003993 1.7e-10 68.2 40 87.5
PSO782G1667 Papaver somniferum HOM05D003522 ORTHO05D003993 1.7e-10 68.2 40 85.0
BcaB03g16666 Brassica carinata HOM05D003522 ORTHO05D003993 2.2e-10 67.8 36 94.4
Thhalv10026682m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 2.2e-10 67.8 36 94.4
MSTRG.26107 Avicennia marina HOM05D003522 ORTHO05D003993 2.9e-10 67.4 40 80.0
Psat6g005000 Pisum sativum HOM05D003522 ORTHO05D003993 2.9e-10 67.4 40 82.5
Psat6g139240 Pisum sativum HOM05D003522 ORTHO05D003993 2.9e-10 67.4 40 80.0
Sabra18G0083100 Salix brachista HOM05D003522 ORTHO05D003993 2.9e-10 67.4 38 84.2
PGSC0003DMG400025548 Solanum tuberosum HOM05D003522 ORTHO05D003993 2.9e-10 67.4 40 82.5
CAN.G929.30 Capsicum annuum HOM05D003522 ORTHO05D003993 3.7e-10 67.0 36 88.9
AUR62003643 Chenopodium quinoa HOM05D003522 ORTHO05D003993 3.7e-10 67.0 36 88.9
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 3.7e-10 67.0 40 80.0
Hund03511 Selenicereus undatus HOM05D003522 ORTHO05D003993 3.7e-10 67.0 36 88.9
Sc03g0004630 Simmondsia chinensis HOM05D003522 ORTHO05D003993 3.7e-10 67.0 36 88.9
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 4.9e-10 66.6 40 80.0
FAN01G2196 Fragaria x ananassa HOM05D003522 ORTHO05D003993 4.9e-10 66.6 36 91.7
FAN06G0337 Fragaria x ananassa HOM05D003522 ORTHO05D003993 4.9e-10 66.6 36 91.7
FAN10G2139 Fragaria x ananassa HOM05D003522 ORTHO05D003993 4.9e-10 66.6 36 91.7
FAN17G0034 Fragaria x ananassa HOM05D003522 ORTHO05D003993 4.9e-10 66.6 36 91.7
FAN22G0545 Fragaria x ananassa HOM05D003522 ORTHO05D003993 4.9e-10 66.6 36 91.7
A07p01870 Brassica napus HOM05D001097 ORTHO05D001009 8.3e-10 65.9 36 91.7
C07p04000 Brassica napus HOM05D001097 ORTHO05D001009 8.3e-10 65.9 36 91.7
BolC7t40790H Brassica oleracea HOM05D003522 ORTHO05D003993 8.3e-10 65.9 36 91.7
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 8.3e-10 65.9 36 91.7
ClCG09G010690 Citrullus lanatus HOM05D003522 ORTHO05D003993 8.3e-10 65.9 37 83.8
CsaV3_1G031190 Cucumis sativus L. HOM05D003522 ORTHO05D003993 8.3e-10 65.9 39 79.5
QL08p040368 Quercus lobata HOM05D003522 ORTHO05D003993 8.3e-10 65.9 37 83.8
Cre08.g385200 Chlamydomonas reinhardtii HOM05D003522 ORTHO05D003993 1.1e-09 65.5 40 80.0
CsaV3_7G021700 Cucumis sativus L. HOM05D003522 ORTHO05D003993 1.1e-09 65.5 36 86.1
Lalb_Chr07g0180191 Lupinus albus HOM05D003522 ORTHO05D003993 1.1e-09 65.5 36 86.1
MBI14_g26429_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 1.1e-09 65.5 46 73.9
Nitab4.5_0000033g0430 Nicotiana tabacum HOM05D003522 ORTHO05D003993 1.1e-09 65.5 36 86.1
Nitab4.5_0001678g0020 Nicotiana tabacum HOM05D003522 ORTHO05D003993 1.1e-09 65.5 36 86.1
arahy.Tifrunner.gnm1.ann1.QJ4IDW Arachis hypogaea HOM05D003522 ORTHO05D003993 1.4e-09 65.1 36 86.1
PGSC0003DMG400010156 Solanum tuberosum HOM05D003522 ORTHO05D003993 1.4e-09 65.1 37 83.8
TPR.G19006 Trifolium pratense HOM05D003522 ORTHO05D003993 1.4e-09 65.1 39 76.9
TAR383G1055 Trochodendron aralioides HOM05D003522 ORTHO05D003993 1.4e-09 65.1 40 77.5
BcaC04g22886 Brassica carinata HOM05D003522 ORTHO05D003993 2.4e-09 64.3 34 91.2
Rhsim08G0246800 Rhododendron simsii HOM05D003522 ORTHO05D003993 3.2e-09 63.9 36 83.3
Sabra06G0133600 Salix brachista HOM05D003522 ORTHO05D003993 3.2e-09 63.9 36 83.3
Haze_15038 Corylus avellana HOM05D001148 ORTHO05D000960 5.4e-09 63.2 36 86.1
arahy.Tifrunner.gnm1.ann1.341EN6 Arachis hypogaea HOM05D003522 ORTHO05D003993 7.0e-09 62.8 36 83.3
Peaxi162Scf00317g00617 Petunia axillaris HOM05D003522 ORTHO05D003993 7.0e-09 62.8 36 83.3
Peaxi162Scf00429g00616 Petunia axillaris HOM05D003522 ORTHO05D003993 7.0e-09 62.8 36 83.3
Peaxi162Scf47975g00010 Petunia axillaris HOM05D003522 ORTHO05D003993 7.0e-09 62.8 36 83.3
FAN07G1806 Fragaria x ananassa HOM05D003522 ORTHO05D003993 1.2e-08 62.0 36 86.1
Hma1.2p1_1104F.1_g257440 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.2e-08 62.0 36 80.6
MCO12G107 Micromonas commoda HOM05D003522 ORTHO05D003993 2.0e-08 61.2 40 75.0
vmacro18702 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 2.0e-08 61.2 36 80.6
Hma1.2p1_1261F.1_g271100 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 4.6e-08 60.1 36 80.6
Sopen05g027110 Solanum pennellii HOM05D000176 ORTHO05D000106 1.0e-07 58.9 33 84.8
Thecc.09G164300 Theobroma cacao HOM05D003522 ORTHO05D003993 3.9e-07 57.0 66 53.0
PRCOL_00004725 Prasinoderma coloniale HOM05D003522 ORTHO05D003993 1.1e-06 55.5 34 79.4
vmacro17063 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 1.1e-06 55.5 36 75.0


User provided reference genes

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