Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 0.0e+00 1083.6 547 100.0
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 8.2e-209 730.7 601 67.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 4.0e-195 685.3 654 60.1
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.5e-194 681.0 679 58.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.8e-192 676.4 683 57.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.3e-190 670.2 672 57.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.2e-189 665.6 650 59.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.5e-186 654.4 651 57.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 5.5e-181 638.3 639 58.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 9.4e-181 637.5 640 58.3
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.6e-180 636.7 641 58.8
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 5.2e-179 631.7 633 58.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 6.8e-179 631.3 642 58.6
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 8.9e-155 551.2 663 48.4
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.6e-148 530.4 442 66.3
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 3.1e-131 473.0 591 47.2
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.4e-128 464.2 698 41.5
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 9.6e-125 451.4 657 41.6
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.1e-123 446.4 683 41.4
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.5e-122 442.6 694 40.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.8e-121 439.5 707 40.7
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.1e-119 433.7 704 39.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.1e-119 433.7 704 39.9
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.7e-119 433.3 700 40.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.7e-119 433.3 682 41.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.0e-118 429.9 690 41.0
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.1e-117 427.9 355 65.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.3e-117 426.0 688 41.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 4.3e-117 426.0 651 41.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.1e-115 421.4 709 38.4
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.4e-115 421.0 722 38.5
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.0e-115 419.5 676 41.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 6.9e-115 418.7 637 41.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 9.0e-115 418.3 690 38.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 9.0e-115 418.3 636 40.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 9.0e-115 418.3 699 38.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.5e-114 417.5 644 40.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.0e-114 417.2 633 40.3
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.0e-113 414.8 681 39.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.2e-113 413.7 699 38.5
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 8.4e-113 411.8 711 37.8
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 8.4e-113 411.8 677 38.6
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.1e-112 411.4 677 40.8
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.4e-112 411.0 671 39.2
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.9e-112 410.6 642 39.7
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.9e-112 410.6 599 43.1
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 7.1e-112 408.7 619 41.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 9.3e-112 408.3 632 41.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.2e-111 407.9 697 38.6
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.6e-111 407.5 704 38.6
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-111 407.1 670 40.1
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.5e-111 406.4 678 38.8
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.6e-111 406.0 697 38.6
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.0e-111 405.6 697 38.0
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.9e-111 405.2 628 40.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.0e-110 404.8 599 42.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.0e-110 404.8 641 41.2
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 5.1e-110 402.5 641 40.4
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 1.9e-109 400.6 698 37.8
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.5e-109 400.2 641 40.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.7e-109 399.1 709 37.5
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.4e-109 398.7 707 38.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 9.6e-109 398.3 716 37.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.3e-108 397.9 647 39.1
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.6e-108 397.5 706 36.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.8e-108 396.7 691 40.4
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.8e-108 396.7 687 39.3
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.8e-108 396.0 709 37.2
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.8e-108 396.0 691 40.4
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.1e-107 394.8 689 38.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.8e-107 394.0 709 37.2
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-107 394.0 691 40.2
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 5.3e-107 392.5 627 38.9
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 9.0e-107 391.7 646 39.6
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.2e-106 391.3 572 42.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.4e-106 389.8 691 39.9
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 5.9e-106 389.0 706 37.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.6e-106 388.7 632 38.1
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.6e-106 388.7 570 41.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 8.5e-105 385.2 653 39.2
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.5e-105 385.2 696 39.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 5.5e-104 382.5 693 36.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.2e-104 382.1 696 37.4
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.2e-103 381.3 639 39.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.6e-103 380.9 831 34.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.1e-103 380.6 667 37.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.7e-103 380.2 582 40.2
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.6e-103 379.4 662 39.0
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 7.9e-103 378.6 620 39.2
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 5.7e-101 372.5 619 38.8
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 4.8e-100 369.4 705 36.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 6.3e-100 369.0 651 37.8
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.1e-99 366.7 591 39.9
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-98 364.8 614 38.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.7e-97 360.9 582 41.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.2e-96 356.7 661 38.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.2e-95 354.8 512 42.4
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.0e-94 351.7 601 39.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 8.8e-94 348.6 615 37.4
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-93 348.2 664 36.3
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.3e-93 346.7 661 34.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.8e-92 343.6 636 36.0
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.8e-92 342.8 625 37.3
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.4e-86 324.7 474 42.0
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-85 320.9 616 36.0
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 7.4e-85 318.9 415 43.9
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 4.8e-84 316.2 681 33.5
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 5.3e-83 312.8 401 44.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.1e-83 312.0 444 44.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.6e-79 301.2 573 35.4
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 6.3e-76 289.3 507 38.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 9.1e-75 285.4 532 37.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 9.4e-72 275.4 513 36.5
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 1.7e-65 254.6 381 42.3
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.5e-64 250.8 254 55.5
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.7e-63 246.5 339 44.2
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.3e-62 244.2 621 31.4
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 7.8e-58 229.2 701 26.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.6e-56 223.0 339 42.5
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 9.5e-56 222.2 355 41.7
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.4e-54 218.4 703 27.0
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-53 215.3 288 42.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 3.5e-50 203.8 518 30.3
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-48 198.4 360 36.7
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 3.1e-46 190.7 618 30.6
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.2e-45 188.7 199 55.3
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.0e-42 177.9 350 35.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.2e-39 168.7 164 52.4
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.1e-38 164.1 449 29.8
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.8e-38 162.9 408 28.9
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.5e-37 161.8 301 32.6
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 4.1e-35 153.7 187 50.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 6.6e-33 146.4 426 30.5
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.4e-27 127.9 85 68.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.2e-27 127.5 86 66.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.1e-27 127.1 194 41.2
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.1e-27 126.3 117 60.7
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.6e-26 123.6 106 55.7
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 3.3e-24 117.5 142 45.1
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.6e-24 115.9 549 24.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.2e-23 113.2 94 57.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.0e-22 110.5 228 35.1
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 7.1e-19 99.8 206 36.9
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.7e-18 97.8 65 73.8
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.7e-17 92.8 224 32.6
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 8.7e-17 92.8 99 55.6
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.9e-16 91.7 76 65.8
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 5.6e-16 90.1 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.2e-15 86.7 194 30.9
AL823U10020 Arabidopsis lyrata HOM05D000427 ORTHO05D014838 1.1e-14 85.9 62 66.1
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.4e-14 84.7 187 32.1
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.6e-13 81.3 148 35.8
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.2e-10 72.4 195 29.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.3e-09 68.2 137 35.0
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 2.5e-08 64.7 69 46.4
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 4.3e-08 63.9 41 63.4
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 8.1e-07 59.7 66 48.5
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.0e-06 56.2 161 28.0


User provided reference genes

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