Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 0.0e+00 1605.1 892 100.0
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 0.0e+00 1492.6 893 92.6
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 0.0e+00 1492.6 824 93.4
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 0.0e+00 1393.3 831 87.0
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1385.5 828 87.2
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1376.3 821 87.2
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1369.0 832 86.2
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1368.6 832 86.2
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 0.0e+00 1359.7 832 86.3
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1324.3 826 83.9
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1323.5 825 83.6
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1323.5 825 83.6
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1315.1 826 83.7
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 0.0e+00 1306.6 834 82.7
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1299.3 825 82.5
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1251.1 826 80.5
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 0.0e+00 1109.4 844 71.1
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 6.2e-289 997.7 797 66.9
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 2.2e-286 989.2 799 66.2
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 2.4e-285 985.7 828 64.5
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 8.7e-283 977.2 807 65.4
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.1e-280 968.8 807 64.9
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 3.1e-280 968.8 798 64.7
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 7.6e-279 964.1 806 64.4
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.9e-278 962.2 831 62.7
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 6.4e-278 961.1 800 64.5
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 1.4e-277 959.9 799 64.0
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 9.3e-277 957.2 801 64.4
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 4.6e-276 954.9 831 63.3
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 1.9e-274 949.5 800 64.8
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 4.8e-273 944.9 800 63.2
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.8e-272 943.0 805 63.5
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 3.1e-272 942.2 835 61.9
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.0e-270 937.2 848 62.0
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 3.8e-270 935.3 837 62.6
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 4.9e-270 934.9 829 62.0
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 5.5e-269 931.4 803 63.5
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.6e-268 929.9 803 62.9
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 7.9e-268 927.5 801 62.5
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 1.0e-267 927.2 836 61.5
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.3e-267 926.8 798 62.8
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 6.7e-267 924.5 803 62.9
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 1.5e-266 923.3 802 62.1
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 3.3e-266 922.2 824 61.3
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 6.3e-265 917.9 816 61.6
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 8.2e-265 917.5 800 63.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.1e-264 917.1 841 59.6
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.8e-264 916.4 800 62.5
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 2.4e-264 916.0 803 62.9
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 3.1e-264 915.6 841 60.4
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 6.9e-264 914.4 799 62.0
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.2e-263 913.7 822 61.2
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.7e-262 909.8 800 61.5
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.7e-262 909.8 805 62.0
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.2e-262 909.4 836 61.1
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 1.1e-261 907.1 831 60.2
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 3.2e-261 905.6 799 61.8
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 5.5e-261 904.8 805 61.6
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.1e-260 902.9 817 60.7
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 2.7e-260 902.5 802 61.5
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 2.7e-260 902.5 855 58.2
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 7.9e-260 901.0 824 60.3
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 2.3e-259 899.4 799 61.3
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 3.0e-259 899.0 845 59.5
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 3.9e-259 898.7 800 61.0
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 6.7e-259 897.9 804 61.8
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 6.3e-257 891.3 827 59.6
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.1e-256 890.6 805 60.4
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 3.8e-254 882.1 824 59.6
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 5.0e-254 881.7 799 59.2
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 2.1e-252 876.3 843 58.6
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 3.0e-251 872.5 823 59.1
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 3.9e-251 872.1 537 86.4
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 3.9e-251 872.1 808 59.7
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 5.1e-251 871.7 747 63.2
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 6.7e-251 871.3 840 58.1
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 8.8e-251 870.9 817 59.9
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 8.8e-251 870.9 803 62.3
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 1.5e-250 870.2 866 56.5
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 8.2e-249 864.4 884 55.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.1e-248 862.4 803 58.9
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 9.1e-248 860.9 818 58.3
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 5.9e-247 858.2 826 59.8
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 8.5e-246 854.4 803 59.3
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.9e-245 853.2 798 60.0
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 2.2e-241 839.7 742 61.7
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.4e-240 837.0 740 60.9
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.6e-234 816.2 953 51.7
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 7.5e-234 814.7 802 56.4
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 6.1e-228 795.0 695 61.9
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 1.2e-226 790.8 797 56.2
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 2.6e-226 789.6 797 54.7
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 4.8e-225 785.4 802 55.7
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 1.8e-216 756.9 803 53.7
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 4.1e-216 755.7 731 57.9
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 2.8e-212 743.0 856 51.5
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 7.0e-208 728.4 795 54.3
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 6.6e-206 721.8 795 52.6
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 5.8e-194 682.2 728 51.8
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 4.3e-165 586.3 883 44.4
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.4e-160 571.2 873 43.6
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 4.5e-154 549.7 506 57.9
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.3e-137 495.0 668 47.9
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 7.2e-136 489.2 847 39.4
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 1.6e-135 488.0 844 40.2
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.0e-121 442.2 436 55.3
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.7e-106 389.4 351 56.7
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 1.5e-93 348.6 301 70.1
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 2.5e-88 331.3 999 30.9
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.5e-82 310.8 220 74.1
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 4.0e-78 297.4 442 43.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 2.4e-62 245.0 740 32.0
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 3.7e-47 194.5 343 37.6
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 7.1e-43 180.3 191 52.4
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 1.1e-40 172.9 107 78.5
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 7.4e-40 170.2 106 79.2
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 2.1e-34 152.1 236 42.4
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.2e-27 128.3 87 77.0
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.3e-24 117.9 144 45.8
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 6.3e-23 114.0 782 24.4
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 6.5e-20 104.0 73 71.2
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.0e-12 77.8 46 82.6
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 9.4e-11 73.6 178 36.0
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.2e-07 62.4 63 42.9
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.8e-07 62.0 76 38.2
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 4.8e-07 61.2 92 35.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 6.3e-07 60.8 67 40.3
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 8.2e-07 60.5 76 38.2
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.1e-06 60.1 89 38.2
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.4e-06 58.9 76 36.8
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 3.1e-06 58.5 63 41.3
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 4.1e-06 58.2 89 36.0
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 4.1e-06 58.2 63 41.3
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 4.1e-06 58.2 63 42.9
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.3e-06 57.8 63 41.3
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 7.0e-06 57.4 63 39.7
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 7.0e-06 57.4 63 41.3
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 9.1e-06 57.0 73 38.4
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 9.1e-06 57.0 61 44.3


User provided reference genes

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