Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19030 Arabidopsis lyrata HOM05D001670 ORTHO05D038644 0.0e+00 1422.5 711 100.0
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.2e-190 669.8 363 91.7
BcaC07g41470 Brassica carinata HOM05D001670 ORTHO05D038644 5.6e-125 452.6 565 50.3
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 8.3e-28 129.8 265 35.8
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.4e-27 129.0 265 35.1
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.4e-27 129.0 265 35.8
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.9e-27 128.6 264 35.6
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.9e-27 128.6 264 35.6
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.4e-27 128.3 264 35.6
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.4e-27 128.3 264 35.6
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.4e-27 128.3 264 35.6
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.4e-27 128.3 264 35.2
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 3.2e-27 127.9 275 34.2
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 3.2e-27 127.9 264 35.6
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 3.2e-27 127.9 264 35.6
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 4.1e-27 127.5 263 35.0
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 4.1e-27 127.5 263 35.7
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 5.4e-27 127.1 264 36.0
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 7.0e-27 126.7 263 34.6
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 7.0e-27 126.7 262 35.1
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 7.0e-27 126.7 264 35.2
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 9.2e-27 126.3 265 35.5
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 9.2e-27 126.3 265 34.3
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 9.2e-27 126.3 265 34.3
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 9.2e-27 126.3 261 36.0
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 9.2e-27 126.3 264 35.6
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.2e-26 125.9 263 35.7
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.2e-26 125.9 264 35.6
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.2e-26 125.9 264 35.6
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.2e-26 125.9 264 34.8
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.2e-26 125.9 264 34.5
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.2e-26 125.9 264 34.5
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.2e-26 125.9 264 36.0
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.6e-26 125.6 265 34.7
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 1.6e-26 125.6 265 34.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 1.6e-26 125.6 265 34.3
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 1.6e-26 125.6 265 34.3
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.6e-26 125.6 263 35.4
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.6e-26 125.6 262 36.3
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.6e-26 125.6 264 36.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.6e-26 125.6 260 36.5
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 3.5e-26 124.4 262 35.9
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 3.5e-26 124.4 264 34.8
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 3.5e-26 124.4 264 35.6
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 4.6e-26 124.0 264 35.2
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 4.6e-26 124.0 265 34.0
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 4.6e-26 124.0 265 34.0
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 4.6e-26 124.0 264 36.4
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 4.6e-26 124.0 265 34.3
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 4.6e-26 124.0 264 34.5
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 6.0e-26 123.6 264 34.5
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 6.0e-26 123.6 264 35.2
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 6.0e-26 123.6 264 36.4
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 6.0e-26 123.6 264 35.6
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 7.8e-26 123.2 265 34.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 7.8e-26 123.2 264 36.0
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 7.8e-26 123.2 264 35.6
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 7.8e-26 123.2 264 35.2
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 7.8e-26 123.2 264 35.2
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 7.8e-26 123.2 264 34.1
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.0e-25 122.9 264 34.8
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.0e-25 122.9 264 36.0
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.0e-25 122.9 264 34.8
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 1.3e-25 122.5 263 33.8
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.3e-25 122.5 264 35.2
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.3e-25 122.5 264 35.2
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 1.3e-25 122.5 265 33.6
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.3e-25 122.5 262 35.5
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.3e-25 122.5 262 35.5
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.3e-25 122.5 244 36.9
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.7e-25 122.1 265 33.6
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.7e-25 122.1 242 36.8
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.7e-25 122.1 264 35.2
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.7e-25 122.1 265 34.7
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.7e-25 122.1 264 34.5
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.3e-25 121.7 261 34.9
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.3e-25 121.7 263 34.6
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 2.3e-25 121.7 264 34.1
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.3e-25 121.7 248 35.1
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.0e-25 121.3 264 34.8
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.0e-25 121.3 262 34.7
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 3.0e-25 121.3 263 34.6
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 3.9e-25 120.9 264 35.2
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 3.9e-25 120.9 265 33.2
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 3.9e-25 120.9 265 34.3
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 3.9e-25 120.9 258 34.5
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 5.0e-25 120.6 264 35.2
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 5.0e-25 120.6 264 34.1
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 5.0e-25 120.6 264 34.5
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 5.0e-25 120.6 264 34.1
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 6.6e-25 120.2 263 34.2
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.6e-25 120.2 246 35.4
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 6.6e-25 120.2 260 35.8
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 6.6e-25 120.2 261 34.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.6e-25 120.2 263 33.5
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 8.6e-25 119.8 264 33.7
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 8.6e-25 119.8 221 38.5
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.1e-24 119.4 246 36.6
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.1e-24 119.4 264 36.0
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.1e-24 119.4 264 34.5
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.1e-24 119.4 265 35.1
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.1e-24 119.4 263 34.6
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.1e-24 119.4 264 34.1
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.5e-24 119.0 262 34.7
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 1.9e-24 118.6 259 34.4
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-24 118.2 260 35.8
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 3.3e-24 117.9 264 33.3
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 3.3e-24 117.9 264 34.8
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 3.3e-24 117.9 264 34.5
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.3e-24 117.9 453 26.3
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 4.3e-24 117.5 265 34.0
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 5.6e-24 117.1 262 32.8
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 5.6e-24 117.1 263 33.8
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 5.6e-24 117.1 261 33.0
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 7.3e-24 116.7 263 33.8
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 7.3e-24 116.7 259 35.1
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 1.2e-23 115.9 263 33.5
Hma1.2p1_0341F.1_g130250 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.2e-23 115.9 265 34.0
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.2e-23 115.9 264 33.3
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 1.6e-23 115.5 264 34.1
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 2.1e-23 115.2 264 34.1
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 2.1e-23 115.2 278 32.7
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 3.6e-23 114.4 265 33.6
Zm00001eb177620 Zea mays HOM05D001670 ORTHO05D002980 4.7e-23 114.0 222 36.5
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 6.2e-23 113.6 260 35.8
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 1.1e-22 112.8 227 37.4
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.4e-22 112.5 461 28.2
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 3.1e-22 111.3 285 32.3
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 5.2e-22 110.5 248 33.9
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 6.8e-22 110.2 266 34.2
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 8.9e-22 109.8 263 33.1
BcaC04g24208 Brassica carinata HOM05D001670 ORTHO05D002980 1.5e-21 109.0 283 32.5
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 3.4e-21 107.8 264 33.0
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.4e-21 107.8 242 34.7
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 4.4e-21 107.5 251 34.7
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 4.4e-21 107.5 227 36.6
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 7.5e-21 106.7 228 35.1
Haze_02722 Corylus avellana HOM05D001670 ORTHO05D002980 9.8e-21 106.3 206 37.4
BolC9t52941H Brassica oleracea HOM05D001670 ORTHO05D002980 2.2e-20 105.1 218 36.7
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 6.4e-20 103.6 227 36.1
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 1.9e-19 102.1 177 37.9
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.9e-19 102.1 259 32.8
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.4e-19 101.7 177 37.9
HanXRQChr16g0519701 Helianthus annuus HOM05D001670 ORTHO05D002980 3.2e-19 101.3 248 33.9
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 5.4e-19 100.5 227 35.2
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 1.2e-18 99.4 265 29.8
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 2.7e-18 98.2 266 32.3
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 4.6e-18 97.4 227 33.5
CDE11G1021 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 7.8e-18 96.7 149 43.0
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 2.3e-17 95.1 287 29.6
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 4.3e-16 90.9 264 30.7
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 6.2e-15 87.0 265 28.7
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 6.2e-15 87.0 265 28.3
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 1.8e-14 85.5 199 33.7
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 1.5e-13 82.4 267 30.7
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 1.9e-11 75.5 186 34.4
Zm00001eb208290 Zea mays HOM05D001670 ORTHO05D002980 5.4e-11 73.9 143 36.4
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 4.6e-10 70.9 157 35.7
CSS0016099 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 6.0e-10 70.5 137 37.2
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 1.3e-09 69.3 147 35.4
Zm00001eb235140 Zea mays HOM05D001670 ORTHO05D002980 5.1e-09 67.4 104 38.5
Os03g0102333 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 4.3e-08 64.3 96 41.7
ECA234G2815 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.8e-07 61.6 96 40.6
SHI13578 Sapria himalayana HOM05D001670 ORTHO05D002980 1.1e-06 59.7 128 35.2
MBI02_g40780_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D012267 5.2e-06 57.4 146 31.5


User provided reference genes

Program Settings