Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.1e-96 356.7 180 100.0
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 2.5e-90 335.5 180 94.4
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.7e-86 322.8 180 91.7
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 1.5e-79 299.7 178 87.1
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 2.6e-79 298.9 178 86.5
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 1.3e-78 296.6 178 84.8
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.7e-78 296.2 180 82.2
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 4.9e-78 294.7 180 81.1
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 4.9e-78 294.7 180 81.7
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 6.5e-78 294.3 180 81.1
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 6.5e-78 294.3 180 81.1
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 6.5e-78 294.3 180 81.7
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 8.4e-78 293.9 180 81.1
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 8.4e-78 293.9 180 81.1
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 8.4e-78 293.9 180 81.1
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 8.4e-78 293.9 180 80.6
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 8.4e-78 293.9 180 81.1
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 3.2e-77 292.0 179 81.6
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 4.2e-77 291.6 180 80.6
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 5.5e-77 291.2 178 84.3
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 1.2e-76 290.0 180 79.4
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 2.7e-76 288.9 180 80.0
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 7.9e-76 287.3 180 79.4
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 1.0e-75 287.0 180 78.3
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 1.3e-75 286.6 180 78.9
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 1.8e-75 286.2 180 78.9
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 2.3e-75 285.8 178 79.2
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 3.0e-75 285.4 180 77.2
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 3.0e-75 285.4 180 78.3
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 3.0e-75 285.4 180 78.9
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 3.9e-75 285.0 180 78.9
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 5.1e-75 284.6 180 78.3
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 6.7e-75 284.3 178 79.2
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.1e-74 283.5 180 77.8
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 1.9e-74 282.7 178 78.1
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 2.5e-74 282.3 180 78.3
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 3.3e-74 282.0 178 76.4
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 4.3e-74 281.6 180 77.2
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 7.4e-74 280.8 180 77.8
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 9.6e-74 280.4 180 76.7
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 9.6e-74 280.4 180 78.9
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.3e-73 280.0 180 77.8
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.3e-73 280.0 180 76.7
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 1.6e-73 279.6 180 75.6
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.1e-73 279.3 178 77.5
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 2.1e-73 279.3 179 77.7
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 2.8e-73 278.9 180 76.1
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 3.7e-73 278.5 178 76.4
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 3.7e-73 278.5 180 76.1
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.1e-72 276.9 180 77.2
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 1.1e-72 276.9 179 78.2
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 2.4e-72 275.8 179 76.0
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 5.3e-72 274.6 179 76.5
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.3e-72 274.6 179 76.5
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 9.0e-72 273.9 180 76.1
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 1.5e-71 273.1 180 75.0
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 2.0e-71 272.7 180 75.6
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.0e-71 272.7 179 75.4
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 2.6e-71 272.3 180 76.1
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.5e-71 271.6 179 76.0
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 7.6e-71 270.8 178 75.8
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 2.2e-70 269.2 180 73.9
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 8.5e-70 267.3 180 72.8
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 1.1e-69 266.9 180 72.2
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.2e-69 265.0 185 73.0
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 5.5e-69 264.6 180 71.7
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 5.5e-69 264.6 180 71.7
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 1.6e-68 263.1 179 72.6
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 1.6e-68 263.1 180 73.3
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 4.6e-68 261.5 165 77.0
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 6.1e-68 261.2 158 84.2
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 3.0e-67 258.8 180 70.0
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 3.3e-66 255.4 180 71.7
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 3.3e-66 255.4 180 70.6
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 5.7e-66 254.6 180 71.1
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.6e-65 253.1 161 77.6
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 8.2e-65 250.8 179 72.6
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.1e-64 250.4 180 71.1
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 1.1e-64 250.4 180 70.0
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 1.1e-64 250.4 180 68.9
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.4e-64 250.0 180 68.9
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 1.4e-64 250.0 162 75.3
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.8e-64 249.6 180 68.3
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 2.4e-64 249.2 180 68.9
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 2.4e-64 249.2 180 68.3
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 5.3e-64 248.1 180 68.3
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 5.9e-63 244.6 180 67.8
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 1.7e-62 243.0 160 75.0
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 1.9e-61 239.6 180 65.6
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 4.6e-60 235.0 183 69.4
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 6.1e-60 234.6 180 68.3
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 1.4e-59 233.4 179 64.8
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 1.4e-59 233.4 159 72.3
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.0e-58 229.6 156 72.4
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 3.3e-58 228.8 162 72.8
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 3.3e-58 228.8 174 66.1
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.8e-57 225.7 179 67.6
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.8e-57 225.7 173 61.8
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 9.1e-56 220.7 188 62.8
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 5.9e-55 218.0 180 63.9
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 7.7e-55 217.6 143 76.2
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 2.2e-54 216.1 210 56.7
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.5e-54 214.5 148 71.6
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 3.9e-51 205.3 180 60.6
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 4.1e-48 195.3 127 74.8
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 7.0e-48 194.5 110 86.4
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 5.9e-47 191.4 173 52.6
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 1.3e-46 190.3 115 79.1
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 3.8e-46 188.7 162 58.6
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 3.2e-45 185.7 113 80.5
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 3.3e-42 175.6 119 71.4
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-37 159.5 147 53.1
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 9.5e-29 131.0 96 68.8
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 7.5e-26 121.3 165 40.0
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 4.9e-25 118.6 73 82.2
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 1.7e-22 110.2 180 35.0
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 8.0e-20 101.3 72 66.7
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 2.3e-14 83.2 141 34.0
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 3.0e-14 82.8 53 77.4
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 1.9e-13 80.1 196 29.1
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 5.6e-13 78.6 81 45.7
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 7.3e-13 78.2 168 29.2
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 8.0e-12 74.7 49 71.4
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 3.9e-06 55.8 162 27.8
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 3.9e-06 55.8 165 27.9


User provided reference genes

Program Settings