Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.4e-222 774.6 376 100.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.3e-169 598.6 377 80.4
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.7e-166 587.4 316 89.2
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.6e-153 545.8 335 79.4
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 3.4e-153 545.4 335 79.4
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.9e-152 541.6 319 81.5
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.4e-151 540.0 333 78.1
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.3e-149 532.7 318 80.8
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 6.8e-146 521.2 288 86.8
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 5.7e-145 518.1 318 78.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.9e-144 515.8 318 78.6
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.9e-144 515.8 318 78.0
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 6.3e-144 514.6 318 77.7
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.4e-143 513.5 318 77.7
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-143 513.5 318 77.7
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.4e-143 513.5 318 77.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 9.2e-143 510.8 318 78.0
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 9.2e-143 510.8 318 78.0
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.2e-142 510.4 318 78.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.2e-142 510.4 318 78.0
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.0e-141 507.3 320 77.2
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.5e-137 493.4 338 70.7
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.0e-137 493.0 331 71.9
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 6.6e-133 478.0 318 70.4
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 3.3e-132 475.7 319 69.3
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 9.5e-132 474.2 319 68.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 9.5e-132 474.2 320 67.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.1e-130 470.7 318 68.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.4e-130 470.3 318 67.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.4e-130 470.3 318 68.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 3.1e-130 469.2 319 69.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.5e-129 466.8 319 68.7
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 2.0e-129 466.5 326 66.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 7.5e-129 464.5 319 68.0
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.7e-128 463.4 319 68.7
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.9e-128 462.6 317 67.2
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.9e-128 462.6 319 67.4
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 6.4e-128 461.5 320 67.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.4e-127 459.5 320 67.2
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.2e-127 459.1 319 66.5
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 5.4e-127 458.4 318 67.3
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.1e-127 458.0 319 65.8
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 9.2e-127 457.6 320 66.9
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 9.2e-127 457.6 318 67.3
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.2e-126 457.2 319 64.3
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.7e-126 456.1 319 65.5
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.7e-126 456.1 321 67.3
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.3e-125 453.8 319 65.2
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.3e-125 453.8 319 65.8
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 1.7e-125 453.4 332 65.7
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.7e-125 453.4 319 66.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.0e-125 452.6 318 66.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.5e-124 450.3 324 66.7
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.3e-124 448.7 319 65.2
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 5.6e-124 448.4 319 64.9
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.8e-123 446.0 320 65.3
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.6e-123 445.7 319 64.9
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 6.2e-123 444.9 319 64.6
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 8.1e-123 444.5 320 64.7
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.1e-122 444.1 318 65.4
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-122 443.4 319 64.9
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-122 443.4 319 64.9
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.8e-122 443.4 318 65.1
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 2.3e-122 443.0 320 64.4
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 3.1e-122 442.6 321 65.1
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.5e-121 440.3 318 65.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 4.4e-121 438.7 362 59.4
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.2e-120 436.4 330 62.7
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 4.9e-120 435.3 345 60.6
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.1e-119 434.1 323 61.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 4.1e-119 432.2 324 63.6
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 9.2e-119 431.0 319 64.9
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.6e-118 430.3 329 62.9
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 2.1e-118 429.9 331 62.8
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.7e-118 429.5 319 63.6
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 4.6e-118 428.7 397 54.9
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 6.0e-118 428.3 319 64.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.3e-117 426.4 318 63.2
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 2.3e-117 426.4 362 58.3
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.5e-116 422.9 322 62.7
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-115 420.6 320 59.4
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.2e-115 418.3 345 59.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-113 413.7 319 63.9
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.8e-112 409.1 363 56.5
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 3.8e-112 409.1 319 61.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.4e-111 406.4 317 62.5
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.6e-110 403.7 318 59.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.5e-110 402.5 315 61.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.5e-110 402.5 319 61.1
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.9e-108 396.7 348 57.8
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.1e-107 393.3 301 61.1
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 6.2e-107 391.7 318 59.7
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.8e-106 390.2 319 59.9
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 4.0e-106 389.0 297 62.0
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 5.3e-106 388.7 317 59.3
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.5e-105 387.1 315 56.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.5e-105 387.1 315 56.8
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.9e-101 372.5 324 56.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.9e-100 370.2 318 57.5
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 5.6e-100 368.6 326 53.7
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 4.8e-99 365.5 335 55.2
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 4.0e-98 362.5 273 63.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 6.9e-98 361.7 294 58.5
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.2e-96 356.7 319 55.8
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 9.3e-95 351.3 326 52.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.3e-92 342.4 309 56.6
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.8e-90 337.0 340 49.4
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.0e-88 331.3 356 47.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 2.2e-88 330.1 304 53.9
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 3.8e-88 329.3 198 78.8
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.8e-88 329.3 319 51.7
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 6.0e-86 322.0 345 47.2
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.3e-85 320.1 318 53.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 7.4e-84 315.1 232 61.6
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 7.4e-84 315.1 194 76.3
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.8e-83 313.2 318 49.7
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.2e-81 307.8 190 75.3
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.9e-80 303.1 334 44.6
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 3.2e-79 299.7 185 75.1
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 4.6e-78 295.8 314 48.4
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 4.3e-76 289.3 313 48.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.7e-75 286.2 171 77.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.3e-74 282.3 227 62.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.7e-73 278.5 187 69.5
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.7e-72 277.3 187 69.0
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.8e-69 267.3 342 40.6
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.3e-69 266.9 157 77.7
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 8.2e-67 258.5 359 39.8
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 6.9e-66 255.4 315 39.4
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.7e-62 243.4 187 61.5
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 4.7e-62 242.7 347 38.9
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 7.9e-62 241.9 151 77.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.3e-58 229.2 167 65.3
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 7.0e-58 228.8 137 75.2
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.2e-56 223.8 237 47.7
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 3.2e-55 219.9 118 85.6
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 7.0e-50 202.2 359 38.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 7.7e-49 198.7 112 83.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.2e-45 186.0 104 81.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.8e-45 185.7 220 46.8
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-37 161.0 102 75.5
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 3.4e-36 156.8 119 59.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 4.4e-36 156.4 79 91.1
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.2e-35 154.1 108 65.7
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.2e-35 154.1 122 59.0
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.1e-34 151.8 121 58.7
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 3.1e-34 150.2 84 82.1
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.5e-31 140.6 119 53.8
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.2e-30 138.3 124 50.8
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 3.6e-30 136.7 127 48.0
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.0e-29 133.3 180 40.6
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.4e-28 130.2 181 44.2
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 4.4e-28 129.8 182 41.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.3e-27 128.3 124 47.6
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.3e-27 128.3 124 46.8
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.3e-23 113.2 76 65.8
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 9.5e-23 112.1 72 72.2
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 4.9e-19 99.8 70 70.0
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.7e-16 91.3 80 51.2
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.1e-07 62.0 39 61.5


User provided reference genes

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