Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G36340 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 2.4e-270 934.9 455 100.0
AL5G36324 Arabidopsis lyrata HOM05D003635 ORTHO05D004283 3.1e-270 934.5 455 99.8
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 2.6e-269 931.4 455 99.3
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 2.6e-269 931.4 455 99.3
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 6.1e-266 920.2 455 97.4
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 1.8e-265 918.7 455 97.6
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 2.6e-264 914.8 455 97.4
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 4.1e-262 907.5 455 95.6
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 5.9e-261 903.7 455 95.4
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 1.0e-260 902.9 455 95.2
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 1.0e-260 902.9 455 95.2
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 2.5e-259 898.3 455 96.5
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 4.2e-259 897.5 455 96.5
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 2.7e-258 894.8 455 93.6
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 1.1e-251 872.8 455 91.0
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 3.3e-248 861.3 454 89.2
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 9.7e-248 859.8 454 89.0
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 9.7e-248 859.8 454 89.4
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 1.3e-247 859.4 454 89.6
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 1.7e-247 859.0 454 89.6
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 1.7e-247 859.0 454 89.0
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 2.8e-247 858.2 454 89.6
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 3.7e-247 857.8 454 90.3
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 4.8e-247 857.4 454 89.0
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 6.3e-247 857.1 454 89.4
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 1.4e-246 855.9 454 89.0
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 1.4e-246 855.9 454 88.8
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 1.8e-246 855.5 454 89.4
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 1.8e-246 855.5 454 88.8
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 3.1e-246 854.7 454 88.8
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 5.3e-246 854.0 454 88.8
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 5.3e-246 854.0 454 88.3
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 5.3e-246 854.0 454 88.5
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 9.1e-246 853.2 454 88.8
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 2.7e-245 851.7 454 87.9
Duzib128G1000 Durio zibethinus HOM05D003635 ORTHO05D004283 2.7e-245 851.7 454 88.8
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 2.7e-245 851.7 454 88.8
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 4.5e-245 850.9 454 88.1
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 5.9e-245 850.5 454 88.5
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 1.7e-244 849.0 449 89.1
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 1.1e-243 846.3 454 87.4
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 3.2e-243 844.7 453 88.3
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 5.5e-243 844.0 454 87.4
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 5.5e-243 844.0 454 87.9
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 5.5e-243 844.0 455 87.9
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 5.5e-243 844.0 454 88.3
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 7.2e-243 843.6 454 86.8
TPR.G13999 Trifolium pratense HOM05D003635 ORTHO05D004283 9.4e-243 843.2 454 87.2
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 1.2e-242 842.8 454 87.2
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 1.2e-242 842.8 454 87.9
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 8.0e-242 840.1 454 88.3
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 8.0e-242 840.1 454 87.2
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 1.0e-241 839.7 454 88.3
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 1.4e-241 839.3 454 88.5
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 1.4e-241 839.3 454 88.5
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 5.2e-241 837.4 454 88.5
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 1.2e-240 836.3 454 87.7
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.2e-240 836.3 454 87.7
FAN28G1205 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.5e-240 835.9 454 87.4
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 1.5e-240 835.9 454 86.8
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 2.6e-240 835.1 454 87.0
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.4e-240 834.7 454 87.4
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 3.4e-240 834.7 454 85.9
HPP92_016710 Vanilla planifolia HOM05D003635 ORTHO05D004283 3.4e-240 834.7 456 88.2
Rhsim09G0157900 Rhododendron simsii HOM05D003635 ORTHO05D004283 4.4e-240 834.3 454 87.0
Dinv25952 Davidia involucrata HOM05D003635 ORTHO05D004283 7.5e-240 833.6 454 87.0
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 7.5e-240 833.6 454 86.6
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 7.5e-240 833.6 456 87.9
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 6.3e-239 830.5 454 86.1
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 1.4e-238 829.3 454 86.3
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 1.4e-238 829.3 454 85.9
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 2.4e-238 828.6 454 85.7
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.1e-238 828.2 454 87.0
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.1e-238 828.2 454 87.0
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 5.4e-238 827.4 454 87.0
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 7.0e-238 827.0 454 85.7
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 9.1e-238 826.6 454 85.7
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 9.1e-238 826.6 454 85.9
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 2.7e-237 825.1 454 85.2
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 3.5e-237 824.7 454 85.2
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 4.5e-237 824.3 454 85.9
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 1.0e-236 823.2 454 85.0
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 1.3e-236 822.8 464 84.7
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 3.8e-236 821.2 454 85.2
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 3.8e-236 821.2 454 86.3
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 6.5e-236 820.5 454 84.6
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 2.5e-235 818.5 454 85.0
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 9.5e-235 816.6 454 85.7
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 1.2e-234 816.2 454 85.7
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 2.8e-234 815.1 454 85.5
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 3.6e-234 814.7 454 84.4
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 4.7e-234 814.3 464 84.1
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 3.4e-232 808.1 490 79.8
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 2.2e-231 805.4 454 83.0
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 3.7e-231 804.7 454 83.3
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 8.3e-231 803.5 454 83.5
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 1.1e-230 803.1 454 83.5
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 1.8e-230 802.4 454 83.3
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 1.8e-230 802.4 454 83.0
Os02g0137400 Oryza sativa ssp. japonica HOM05D003635 ORTHO05D004283 2.0e-229 798.9 458 83.2
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 3.5e-229 798.1 454 83.3
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 4.5e-229 797.7 454 82.8
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 1.2e-226 789.6 454 82.4
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.6e-226 789.3 454 85.0
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 8.0e-226 786.9 454 84.6
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 3.0e-225 785.0 457 80.3
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 3.2e-222 775.0 454 83.0
FAN03G1481 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.1e-218 762.3 493 75.9
FvH4_7g20980 Fragaria vesca HOM05D003635 ORTHO05D004283 2.6e-216 755.4 494 74.9
FAN06G2419 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.6e-216 755.4 494 74.9
FAN06G4735 Fragaria x ananassa HOM05D003635 ORTHO05D004283 6.4e-215 750.7 494 74.3
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 6.4e-215 750.7 454 81.5
FAN10G2700 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.0e-212 743.4 475 76.4
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 3.9e-212 741.5 454 80.4
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 2.8e-210 735.3 454 76.9
Pp3c4_5190 Physcomitrium patens HOM05D003635 ORTHO05D004283 6.8e-209 730.7 455 76.7
Medtr6g013290 Medicago truncatula HOM05D003635 ORTHO05D004283 2.6e-208 728.8 447 79.9
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 4.9e-207 724.5 376 89.6
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 4.6e-205 718.0 455 74.9
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 6.0e-205 717.6 408 82.4
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 1.0e-204 716.8 455 75.6
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 1.5e-203 713.0 455 73.6
Pp3c12_11240 Physcomitrium patens HOM05D003635 ORTHO05D004283 1.6e-202 709.5 455 74.5
Hma1.2p1_3477F.1_g336300 Hydrangea macrophylla HOM05D003635 ORTHO05D004283 5.4e-198 694.5 382 85.1
Gohir.D04G061100 Gossypium hirsutum HOM05D003635 ORTHO05D004283 7.3e-195 684.1 371 87.1
AUR62023868 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.2e-189 666.8 454 72.0
AagrBONN_evm.TU.Sc2ySwM_362.982 Anthoceros agrestis HOM05D003635 ORTHO05D004283 4.6e-181 638.3 455 68.1
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 4.6e-181 638.3 456 70.6
Actinidia02986 Actinidia chinensis HOM05D003635 ORTHO05D004283 1.1e-174 617.1 456 68.9
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 4.6e-173 611.7 376 75.0
Rhsim09G0158100 Rhododendron simsii HOM05D003635 ORTHO05D004283 2.2e-162 576.2 446 66.6
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 7.6e-160 567.8 320 84.1
Dinv31402 Davidia involucrata HOM05D003635 ORTHO05D004283 1.0e-159 567.4 325 82.5
Actinidia29205 Actinidia chinensis HOM05D003635 ORTHO05D004283 4.6e-157 558.5 415 68.2
Psat5g199040 Pisum sativum HOM05D003635 ORTHO05D004283 1.1e-137 494.2 296 79.7
Actinidia13851 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.7e-128 463.0 415 60.2
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 3.5e-128 462.6 452 50.2
AUR62044277 Chenopodium quinoa HOM05D003635 ORTHO05D004283 2.7e-125 453.0 269 81.8
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 3.6e-125 452.6 463 48.8
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 1.8e-124 450.3 458 50.7
Cc00_g29200 Coffea canephora HOM05D003635 ORTHO05D004283 3.6e-117 426.0 244 82.8
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 2.3e-100 370.2 218 80.3
Carub.0005s2186 Capsella rubella HOM05D003635 ORTHO05D004283 4.1e-97 359.4 174 98.3
Cc00_g13950 Coffea canephora HOM05D003635 ORTHO05D004283 2.4e-89 333.6 174 88.5
AUR62002616 Chenopodium quinoa HOM05D003635 ORTHO05D004283 7.3e-86 322.0 182 81.3
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 1.1e-81 308.1 457 35.4
CDE02G0853 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 3.2e-81 306.6 163 87.7
Psat7g159880 Pisum sativum HOM05D003635 ORTHO05D004283 7.1e-81 305.4 165 85.5
CDE02G2560 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 2.8e-69 266.9 174 73.6
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 4.0e-68 263.1 150 84.7
FAN01G1516 Fragaria x ananassa HOM05D003635 ORTHO05D004283 5.3e-52 209.5 155 66.5
ECA233G4736 Erigeron canadensis HOM05D003635 ORTHO05D004283 1.5e-51 208.0 135 71.1
FAN10G0554 Fragaria x ananassa HOM05D003635 ORTHO05D002227 1.0e-50 205.3 117 80.3
MD07G1188800 Malus domestica HOM05D003635 ORTHO05D004283 4.1e-44 183.3 95 91.6
Psat1g081240 Pisum sativum HOM05D000684 ORTHO05D006827 9.1e-36 155.6 112 70.5
HanXRQChr08g0234771 Helianthus annuus HOM05D003635 ORTHO05D004283 5.5e-33 146.4 71 85.9
A09p07400 Brassica napus HOM05D003635 ORTHO05D004283 6.7e-31 139.4 96 74.0
AUR62002316 Chenopodium quinoa HOM05D003635 ORTHO05D004283 7.0e-28 129.4 157 49.7
FAN10G2922 Fragaria x ananassa HOM05D003635 ORTHO05D004283 2.5e-25 120.9 131 55.0
CARHR289050 Cardamine hirsuta HOM05D003635 ORTHO05D021615 8.0e-24 115.9 57 98.2
CAN.G98.10 Capsicum annuum HOM05D003635 ORTHO05D004283 1.0e-23 115.5 76 65.8
Mapoly0054s0064 Marchantia polymorpha HOM05D003609 ORTHO05D004185 6.7e-23 112.8 365 26.0
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 8.8e-23 112.5 56 87.5
QL07p044690 Quercus lobata HOM05D003609 ORTHO05D004185 2.4e-20 104.4 369 27.4
Atru.chr10.947 Acer truncatum HOM05D003609 ORTHO05D004185 3.8e-18 97.1 365 26.0
EL10Ac3g06633 Beta vulgaris HOM05D003635 ORTHO05D004283 6.5e-18 96.3 45 91.1
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 3.4e-14 84.0 382 24.1
CAN.G371.123 Capsicum annuum HOM05D003609 ORTHO05D004185 9.7e-14 82.4 364 23.9
AUR62039159 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.3e-13 82.0 79 57.0
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 6.3e-13 79.7 378 24.6
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 2.4e-12 77.8 386 24.1
Manes.06G138300 Manihot esculenta HOM05D004403 ORTHO05D006164 3.1e-12 77.4 383 22.5
BcaC04g23440 Brassica carinata HOM05D003635 ORTHO05D021615 3.5e-11 73.9 40 90.0
C09p08310 Brassica napus HOM05D003635 ORTHO05D021615 3.5e-11 73.9 40 90.0
BolC9t53741H Brassica oleracea HOM05D003635 ORTHO05D021615 3.5e-11 73.9 40 90.0
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 1.0e-10 72.4 465 22.8
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 1.3e-10 72.0 386 24.1
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 3.8e-10 70.5 418 22.7
CDE05G3662 Ceratophyllum demersum HOM05D004807 ORTHO05D005915 2.5e-09 67.8 283 22.6
BraA09t36394Z Brassica rapa HOM05D003635 ORTHO05D021615 9.4e-09 65.9 46 67.4
SEGI_12165 Sequoiadendron giganteum HOM05D004403 ORTHO05D006164 9.4e-09 65.9 378 21.7
SMO276G0043 Selaginella moellendorffii HOM05D004807 ORTHO05D005915 2.3e-07 61.2 216 25.9
Zm00001eb128630 Zea mays HOM05D003635 ORTHO05D004283 2.3e-07 61.2 31 83.9
Zm00001eb014440 Zea mays HOM05D002023 ORTHO05D010966 1.2e-06 58.9 43 60.5
Zm00001eb101730 Zea mays HOM05D003635 ORTHO05D004283 1.5e-06 58.5 61 55.7
Zm00001eb335840 Zea mays HOM05D002023 ORTHO05D010966 1.5e-06 58.5 32 75.0
Zm00001eb421210 Zea mays HOM05D002023 ORTHO05D002049 5.7e-06 56.6 42 59.5


User provided reference genes

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