Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 0.0e+00 1389.4 699 100.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 0.0e+00 1125.5 697 82.6
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 0.0e+00 1120.1 704 81.1
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.9e-280 968.0 710 69.3
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.5e-234 816.6 697 64.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.2e-230 802.7 715 62.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 8.6e-203 711.1 714 56.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.9e-202 709.9 712 56.5
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 4.7e-201 705.3 713 56.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 6.2e-201 704.9 713 56.1
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 6.8e-200 701.4 714 55.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.3e-198 694.5 476 75.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.9e-195 685.6 679 58.3
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 3.7e-190 669.1 709 53.2
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 4.9e-190 668.7 680 55.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-167 593.6 722 47.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 5.8e-151 538.9 730 44.9
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.9e-148 528.5 730 44.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.1e-146 524.6 722 43.4
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 2.0e-143 513.8 714 44.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.4e-143 513.1 734 42.8
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.9e-143 512.3 734 42.8
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.7e-142 510.8 710 44.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.2e-142 510.4 732 42.6
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 9.4e-141 505.0 700 43.4
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.1e-140 503.8 720 42.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.7e-140 503.4 709 42.5
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.1e-140 502.3 698 45.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 1.0e-139 501.5 716 41.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.7e-137 494.2 719 42.8
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.7e-137 493.0 717 43.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 8.2e-137 491.9 722 40.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.4e-136 491.1 718 41.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 5.3e-136 489.2 732 42.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 9.1e-136 488.4 711 41.6
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.5e-135 487.6 700 41.7
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.0e-135 487.3 366 69.9
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 5.9e-135 485.7 725 41.0
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.3e-134 484.6 724 41.0
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.2e-134 483.8 712 43.0
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 5.0e-134 482.6 722 43.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.4e-133 481.1 728 40.7
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.9e-133 480.7 722 43.4
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 1.2e-132 478.0 729 40.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.1e-132 477.2 718 40.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.6e-132 476.5 736 40.4
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.6e-132 476.5 718 42.3
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 6.1e-132 475.7 842 38.0
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.3e-131 473.8 722 42.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 6.7e-131 472.2 722 40.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.0e-130 470.7 735 42.0
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.6e-130 470.3 730 41.8
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 3.7e-129 466.5 727 40.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.7e-129 466.5 727 40.4
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 6.3e-129 465.7 732 40.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 7.0e-128 462.2 711 40.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 7.0e-128 462.2 702 41.3
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.2e-127 461.5 716 41.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.5e-127 461.1 694 41.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.0e-127 460.7 703 40.8
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.7e-127 458.8 722 42.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.3e-126 458.0 699 41.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 3.8e-126 456.4 691 42.4
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 5.0e-126 456.1 696 40.7
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.4e-125 454.5 704 41.1
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.9e-125 454.1 584 45.2
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.9e-125 454.1 715 41.0
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.9e-125 454.1 731 40.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.5e-125 453.8 738 39.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.5e-125 453.8 699 40.9
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 5.5e-125 452.6 705 41.7
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.2e-124 451.4 699 41.1
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.7e-124 450.3 703 40.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.7e-124 449.5 731 40.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 8.0e-124 448.7 694 39.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 6.7e-123 445.7 721 42.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.1e-122 444.9 703 40.8
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-122 444.1 688 39.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 4.4e-122 443.0 736 38.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.7e-122 442.6 707 39.7
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.8e-121 440.3 713 38.8
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.3e-121 439.1 702 41.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.3e-118 431.4 612 41.7
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.9e-118 430.3 703 40.4
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.8e-118 429.9 722 39.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.5e-117 427.9 747 40.2
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.2e-117 426.8 696 39.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 9.4e-117 425.2 684 40.2
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.0e-115 419.9 677 39.3
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.6e-114 417.2 715 38.9
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 3.3e-114 416.8 701 38.5
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 7.5e-114 415.6 693 38.7
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.1e-112 410.2 702 39.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.2e-111 408.3 694 38.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.5e-110 402.1 622 41.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.5e-110 402.1 700 39.0
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.5e-109 399.4 692 36.6
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.6e-108 397.9 704 36.5
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.3e-107 394.0 699 37.5
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 7.5e-106 389.0 676 37.6
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.7e-105 387.9 520 43.8
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.7e-102 377.9 682 37.5
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 4.2e-101 373.2 411 51.6
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.3e-97 361.7 503 44.5
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.7e-97 361.3 676 34.8
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.5e-95 353.6 695 35.4
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.2e-92 345.1 578 37.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.1e-92 344.4 716 34.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.0e-91 340.1 433 46.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.9e-91 339.0 464 45.5
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-90 338.2 522 40.6
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.9e-89 334.0 529 40.3
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.4e-81 306.2 524 39.1
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.5e-77 294.3 735 31.3
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.2e-75 286.6 426 43.7
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.2e-74 285.4 718 29.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.0e-74 284.6 411 40.9
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.3e-73 282.0 686 31.9
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.6e-70 269.2 202 67.3
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.8e-68 264.2 714 30.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.2e-66 258.8 363 44.6
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 6.4e-57 226.5 292 45.5
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.7e-55 221.1 713 26.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.3e-54 218.0 376 39.1
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.8e-52 210.3 387 35.9
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-51 208.8 318 43.1
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.9e-46 190.7 230 50.0
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 6.7e-46 189.9 689 25.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.5e-45 188.7 385 35.3
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.5e-42 178.7 146 67.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.5e-42 178.7 164 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.5e-40 170.2 616 25.8
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.3e-37 161.0 491 28.3
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.3e-35 153.7 232 44.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.2e-33 148.3 95 66.3
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.2e-32 144.1 142 51.4
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 4.2e-32 144.1 518 28.2
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 7.9e-31 139.8 95 64.2
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.0e-30 137.9 200 40.5
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.0e-30 137.9 275 32.4
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.7e-28 131.0 229 38.4
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-26 125.6 94 61.7
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.4e-26 124.4 244 38.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.0e-25 120.6 253 36.0
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.0e-22 111.3 573 23.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.8e-20 104.8 147 39.5
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.8e-19 102.1 149 42.3
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.5e-18 97.4 65 73.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.7e-17 95.5 76 65.8
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.0e-14 86.3 205 28.3
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 1.0e-14 86.3 59 67.8
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 6.7e-14 83.6 103 50.5
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.1e-11 74.7 364 22.8
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 5.3e-11 73.9 42 66.7
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.9e-08 65.5 309 23.9
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 5.5e-08 63.9 63 46.0
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.5e-08 63.9 65 47.7
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 2.7e-07 61.6 63 44.4
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.6e-07 61.2 81 43.2
BcaC02g09546 Brassica carinata HOM05D037504 ORTHO05D032183 2.3e-06 58.5 173 30.6


User provided reference genes

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