Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.0e-137 493.4 256 100.0
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.3e-131 470.3 257 95.3
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-123 446.0 257 90.7
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.0e-114 414.1 256 85.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 8.8e-113 410.6 259 84.9
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 7.0e-110 401.0 259 83.0
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-109 399.8 255 82.4
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-102 376.3 256 79.7
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.8e-102 376.3 256 79.7
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 4.1e-102 375.2 256 78.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.1e-102 375.2 256 78.9
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.7e-101 372.5 256 78.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.7e-101 370.9 254 78.3
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.7e-79 298.9 255 64.7
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.7e-79 298.9 250 65.2
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.7e-79 298.9 254 63.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.9e-79 298.5 258 63.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.3e-79 297.7 255 64.7
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 8.3e-79 297.7 259 65.3
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-78 297.4 254 63.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.4e-78 297.0 249 66.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.9e-78 296.6 254 61.4
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.4e-78 296.2 254 62.6
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.2e-78 295.8 254 62.6
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 4.1e-78 295.4 256 60.9
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 7.0e-78 294.7 256 60.9
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.2e-78 294.3 255 62.7
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 7.8e-77 291.2 256 63.3
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.7e-76 290.0 258 63.2
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.3e-76 289.7 257 62.3
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 5.0e-76 288.5 254 63.8
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.3e-75 285.4 256 61.7
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 5.6e-75 285.0 257 60.7
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.3e-75 284.6 244 63.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 7.3e-75 284.6 260 61.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 9.5e-75 284.3 245 62.4
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.2e-74 283.9 259 62.2
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.8e-73 280.0 257 61.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.0e-73 278.9 244 63.1
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.2e-73 278.5 245 61.2
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.2e-73 278.5 245 61.2
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.5e-72 276.9 246 61.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.0e-72 276.6 205 65.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.0e-72 276.6 220 65.0
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.6e-72 276.2 244 60.7
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.6e-72 276.2 204 71.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 7.5e-72 274.6 248 60.9
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.5e-72 274.6 249 60.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.7e-71 273.5 259 60.2
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.2e-71 273.1 242 61.6
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.9e-71 272.7 256 59.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.7e-71 272.3 262 59.9
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 3.7e-71 272.3 242 61.6
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 4.9e-71 271.9 208 66.8
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 6.4e-71 271.6 251 60.6
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 8.3e-71 271.2 248 60.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.3e-71 271.2 259 60.6
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.4e-70 269.6 197 66.5
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 3.2e-70 269.2 256 60.2
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.2e-70 269.2 253 59.3
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 3.2e-70 269.2 252 59.1
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.2e-70 269.2 250 60.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.2e-70 269.2 180 71.7
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 4.1e-70 268.9 261 60.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 5.4e-70 268.5 245 61.6
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 9.2e-70 267.7 246 61.0
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 9.2e-70 267.7 246 59.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.2e-70 267.7 257 59.5
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-69 267.3 240 60.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 254 58.7
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.6e-69 266.9 253 60.9
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.7e-69 266.2 262 59.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.7e-69 266.2 249 60.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-69 266.2 253 58.5
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.5e-69 265.8 183 70.5
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.5e-69 265.8 254 59.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 4.6e-69 265.4 250 57.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 6.0e-69 265.0 244 59.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 6.0e-69 265.0 242 61.2
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 6.0e-69 265.0 252 59.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 7.8e-69 264.6 254 57.9
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.3e-68 263.8 243 62.1
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.7e-68 263.5 183 70.5
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.7e-68 263.5 262 57.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.7e-68 263.5 239 59.4
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.0e-68 262.7 185 70.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.0e-68 262.7 256 58.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.1e-68 261.9 180 71.1
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 5.1e-68 261.9 256 60.2
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 5.1e-68 261.9 261 59.4
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 6.6e-68 261.5 254 57.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.6e-68 261.5 256 57.8
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.1e-67 260.8 252 59.1
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.5e-67 260.4 239 60.3
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.9e-67 260.0 223 60.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.9e-67 260.0 235 62.1
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.9e-67 260.0 260 59.6
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.9e-67 260.0 263 56.7
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.5e-67 259.6 259 57.5
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.3e-67 259.2 253 60.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 9.5e-67 257.7 245 58.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.2e-66 257.3 181 71.3
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.6e-66 256.9 252 56.3
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.1e-66 256.5 258 57.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.1e-66 256.5 256 59.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.8e-66 256.1 246 61.8
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 3.6e-66 255.8 230 62.2
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.6e-66 255.8 213 61.5
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 6.2e-66 255.0 241 57.3
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 6.2e-66 255.0 188 67.0
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.1e-65 252.7 242 60.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.1e-65 252.7 251 57.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.9e-65 251.1 232 58.6
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.2e-64 250.8 250 57.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 5.8e-64 248.4 259 56.4
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.2e-63 246.5 264 53.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.5e-61 239.2 217 61.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 3.5e-61 239.2 241 55.2
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-61 238.8 254 55.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.3e-60 237.3 219 57.1
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 3.0e-60 236.1 204 61.8
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.2e-58 230.7 187 63.6
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.6e-58 229.2 252 55.2
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 6.2e-58 228.4 172 68.6
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 8.9e-57 224.6 181 63.5
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.2e-56 224.2 180 60.0
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.4e-56 222.2 242 55.4
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 4.4e-56 222.2 197 58.9
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 5.8e-56 221.9 176 61.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 7.6e-56 221.5 226 50.9
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.7e-55 220.3 203 56.7
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.8e-55 219.2 212 54.2
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.2e-54 216.1 196 56.1
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 8.7e-52 208.0 146 67.8
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 4.0e-49 199.1 132 71.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.5e-48 197.2 153 63.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.6e-48 194.9 226 52.2
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.3e-47 194.1 122 81.1
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.9e-46 190.3 262 48.5
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.8e-42 175.6 165 57.6
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.8e-41 173.7 194 52.1
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 4.0e-41 172.6 111 73.0
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.6e-40 168.3 145 57.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 9.9e-40 167.9 219 43.8
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.2e-39 166.8 189 48.7
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 4.2e-38 162.5 261 46.0
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 4.2e-38 162.5 127 66.9
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 5.4e-38 162.2 181 50.8
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.0e-36 156.4 207 48.3
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 7.4e-35 151.8 261 45.2
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-33 146.4 97 70.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.8e-32 142.1 220 38.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 5.8e-32 142.1 165 50.9
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.8e-31 139.4 152 52.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 4.3e-27 125.9 78 74.4
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.6e-27 125.6 78 73.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 8.2e-26 121.7 78 76.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.2e-22 109.4 116 52.6
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 4.3e-19 99.4 75 65.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.0e-16 90.5 103 43.7
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 3.4e-16 89.7 71 59.2
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.0e-15 88.2 86 54.7
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.8e-12 77.4 50 76.0
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 3.9e-12 76.3 137 42.3
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.0e-11 73.9 202 31.7
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 4.3e-11 72.8 49 75.5
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-09 67.4 46 67.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.8e-09 67.4 135 37.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 4.1e-09 66.2 138 35.5
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.5e-08 62.8 54 55.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 6.5e-07 58.9 170 28.8
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-06 55.5 62 46.8
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 7.2e-06 55.5 162 28.4


User provided reference genes

Program Settings