Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.0e-138 494.2 252 100.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.5e-136 486.9 252 98.8
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.4e-131 472.2 252 94.8
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.0e-129 465.3 253 94.1
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.0e-129 465.3 252 94.0
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.9e-128 462.6 252 92.9
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 6.6e-121 437.6 250 90.0
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.5e-120 436.4 251 89.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.5e-120 435.6 250 89.6
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.3e-120 435.3 250 89.6
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-114 415.6 255 84.7
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.7e-114 415.6 255 85.1
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 2.3e-113 412.5 253 85.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.4e-110 403.3 241 85.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-110 403.3 257 82.5
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.8e-106 387.5 256 77.7
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.1e-103 377.5 253 76.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.7e-100 369.8 254 74.0
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.5e-98 362.1 221 83.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.9e-98 360.9 258 72.5
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-97 359.8 250 78.0
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.9e-97 358.6 258 72.1
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.0e-94 347.4 258 69.8
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.4e-93 345.5 256 70.3
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 4.9e-92 341.7 260 68.1
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-91 339.7 255 70.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.3e-88 328.9 265 66.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.1e-87 326.2 262 66.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.8e-87 325.9 266 66.5
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 3.7e-87 325.5 245 68.2
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 4.8e-87 325.1 260 67.7
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 8.2e-87 324.3 251 68.5
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 8.2e-87 324.3 193 80.8
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.4e-86 323.6 248 68.1
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.4e-86 323.6 248 68.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.4e-86 322.8 260 66.2
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.0e-86 322.0 264 66.3
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 4.0e-86 322.0 230 71.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 5.3e-86 321.6 231 71.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.3e-86 321.6 263 65.8
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.9e-86 321.2 256 65.2
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 6.9e-86 321.2 256 66.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 9.0e-86 320.9 259 67.2
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.0e-86 320.9 236 68.6
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.0e-85 319.7 258 68.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.0e-85 319.7 258 65.9
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.6e-85 319.3 261 66.7
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.6e-85 319.3 252 69.0
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.4e-85 318.9 259 65.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.4e-85 318.9 187 80.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.8e-85 318.2 257 65.0
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.8e-85 318.2 184 83.7
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.0e-84 317.4 253 67.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.3e-84 317.0 245 69.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-84 316.6 261 65.9
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.7e-84 316.6 256 66.0
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.2e-84 316.2 265 64.5
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.9e-84 315.8 256 66.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.9e-84 315.8 252 65.9
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 4.9e-84 315.1 262 65.6
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.9e-84 315.1 253 68.0
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-84 315.1 260 65.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 8.4e-84 314.3 184 81.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 8.4e-84 314.3 257 65.8
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.1e-83 313.9 222 71.2
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.1e-83 313.9 200 77.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.1e-83 313.9 251 65.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.1e-83 313.9 253 66.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.4e-83 313.5 234 70.1
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.9e-83 313.2 247 68.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-83 312.8 256 63.7
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.2e-83 312.4 223 71.7
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.2e-83 312.4 263 66.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.2e-83 312.4 252 65.1
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.2e-83 312.4 237 69.2
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.2e-83 312.4 249 65.1
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 4.2e-83 312.0 250 66.0
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.2e-83 312.0 181 82.9
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 7.1e-83 311.2 253 64.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 7.1e-83 311.2 265 64.9
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 9.3e-83 310.8 244 68.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 9.3e-83 310.8 231 68.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.2e-82 310.5 255 65.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.2e-82 310.5 258 65.5
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.2e-82 310.5 249 64.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.1e-82 309.7 236 67.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-82 309.7 257 66.1
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.7e-82 309.3 267 64.8
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 2.7e-82 309.3 249 65.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.7e-82 309.3 261 64.0
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.0e-82 308.1 251 64.9
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 6.0e-82 308.1 256 64.5
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 7.9e-82 307.8 239 68.2
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.0e-81 307.4 240 67.5
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.3e-81 307.0 257 65.8
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.3e-81 307.0 225 68.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-81 306.6 254 63.0
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.8e-81 306.6 262 61.8
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.3e-81 306.2 238 67.2
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.0e-81 305.8 254 66.9
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.0e-81 305.8 180 80.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 3.0e-81 305.8 254 63.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.9e-81 305.4 255 64.7
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.1e-80 303.9 247 64.4
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.5e-80 303.5 186 78.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.5e-80 302.8 263 64.3
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.3e-80 302.4 244 67.2
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 9.7e-80 300.8 264 61.7
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.3e-79 300.4 178 82.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.2e-79 299.7 215 70.7
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.7e-79 298.9 189 76.2
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.7e-79 298.9 254 63.4
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.7e-79 298.9 254 63.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.7e-79 298.9 254 63.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.7e-79 298.9 217 70.5
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.1e-78 295.8 256 62.5
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.2e-77 293.9 254 61.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 6.5e-76 288.1 244 61.5
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 4.6e-74 282.0 189 71.4
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 7.9e-74 281.2 237 64.1
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.3e-73 279.6 166 80.7
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.1e-73 278.5 228 65.8
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-72 276.9 175 77.7
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.7e-72 275.0 195 68.7
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 9.7e-72 274.2 262 60.3
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 3.7e-71 272.3 184 73.9
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.3e-71 271.6 185 74.1
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 2.0e-69 266.5 248 59.7
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.0e-69 266.5 183 68.3
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 7.7e-69 264.6 183 67.8
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.3e-68 263.8 216 62.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.3e-68 263.8 179 70.4
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 6.1e-66 255.0 185 67.0
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 9.1e-62 241.1 165 72.1
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.7e-61 238.0 223 58.3
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.5e-60 234.6 263 54.0
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-59 233.4 232 58.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.6e-58 229.2 152 71.1
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.6e-53 213.8 134 76.1
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.6e-53 213.0 204 57.8
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.5e-52 208.0 205 53.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 9.4e-51 204.5 118 80.5
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.1e-50 203.4 225 53.8
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-48 197.2 124 82.3
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 9.7e-48 194.5 227 50.7
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.3e-46 188.7 176 59.7
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 9.1e-46 188.0 248 49.6
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 9.4e-43 177.9 258 46.5
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.1e-42 176.8 248 48.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.7e-42 176.4 219 46.1
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.7e-42 176.4 127 71.7
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.6e-42 176.0 141 66.0
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 2.3e-41 173.3 171 53.8
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 6.8e-41 171.8 99 85.9
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.9e-36 156.4 80 95.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.0e-36 155.6 79 93.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.0e-29 133.7 103 61.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 6.6e-28 128.6 78 76.9
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.8e-24 114.8 114 55.3
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.7e-23 114.0 97 56.7
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.6e-21 107.5 123 49.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.1e-19 101.3 88 58.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 9.2e-14 81.6 215 33.5
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.0e-13 79.0 52 73.1
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.3e-11 73.2 150 36.7
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.6e-11 72.4 133 39.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.5e-11 71.6 71 47.9
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 3.6e-10 69.7 123 35.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.4e-09 67.8 149 32.9
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-09 66.6 62 58.1
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 5.2e-09 65.9 49 65.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 5.2e-09 65.9 55 58.2
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.4e-08 62.8 44 61.4
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.4e-06 57.8 138 32.6
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 3.2e-06 56.6 101 38.6
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 9.2e-06 55.1 36 75.0


User provided reference genes

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