Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.0e-57 226.5 114 100.0
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.3e-36 156.4 77 100.0
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 1.7e-36 156.0 77 98.7
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 3.9e-36 154.8 77 98.7
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 5.1e-36 154.5 77 98.7
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 8.6e-36 153.7 77 97.4
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-35 153.3 77 97.4
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 1.1e-35 153.3 77 97.4
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 1.6e-34 149.4 77 94.8
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 8.1e-34 147.1 77 92.2
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 2.3e-33 145.6 77 90.9
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 2.3e-33 145.6 77 90.9
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 2.3e-33 145.6 77 90.9
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 3.1e-33 145.2 77 90.9
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 5.2e-33 144.4 77 89.6
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 6.8e-33 144.1 77 89.6
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 6.8e-33 144.1 77 89.6
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 6.8e-33 144.1 77 89.6
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 8.9e-33 143.7 77 90.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 8.9e-33 143.7 77 90.9
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 1.2e-32 143.3 77 89.6
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 1.5e-32 142.9 77 89.6
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 1.5e-32 142.9 77 88.3
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 1.5e-32 142.9 77 88.3
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 1.5e-32 142.9 77 89.6
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 1.5e-32 142.9 77 90.9
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 2.0e-32 142.5 77 89.6
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 2.0e-32 142.5 77 88.3
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 88.3
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 88.3
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 88.3
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 88.3
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 88.3
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 88.3
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 90.9
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 2.6e-32 142.1 77 89.6
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.4e-32 141.7 77 88.3
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 3.4e-32 141.7 75 90.7
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 3.4e-32 141.7 77 88.3
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 3.4e-32 141.7 77 87.0
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 4.4e-32 141.4 77 88.3
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 4.4e-32 141.4 77 88.3
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 88.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 5.8e-32 141.0 112 66.1
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 88.3
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 88.3
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 88.3
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 88.3
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 88.3
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 5.8e-32 141.0 77 87.0
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.6e-32 140.6 77 87.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.6e-32 140.6 77 87.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 7.6e-32 140.6 77 87.0
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 7.6e-32 140.6 77 87.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 7.6e-32 140.6 77 87.0
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 7.6e-32 140.6 112 65.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 85.7
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 85.7
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 85.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 85.7
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 85.7
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 85.7
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 87.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 88.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 9.9e-32 140.2 77 88.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 1.3e-31 139.8 77 87.0
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 1.7e-31 139.4 77 87.0
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 1.7e-31 139.4 78 85.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 2.2e-31 139.0 77 87.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 2.9e-31 138.7 77 85.7
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.9e-31 138.7 77 85.7
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 3.8e-31 138.3 77 85.7
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 3.8e-31 138.3 77 85.7
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 4.9e-31 137.9 77 85.7
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 4.9e-31 137.9 77 84.4
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 4.9e-31 137.9 77 84.4
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.4e-31 137.5 77 85.7
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 8.4e-31 137.1 77 85.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 1.1e-30 136.7 77 84.4
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 1.1e-30 136.7 77 84.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-30 135.6 77 84.4
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 4.1e-30 134.8 77 84.4
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 4.1e-30 134.8 77 87.0
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 1.2e-29 133.3 77 83.1
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 3.9e-28 128.3 77 76.6
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 6.6e-28 127.5 109 64.2
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 8.6e-28 127.1 77 81.8
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.5e-27 126.3 77 77.9
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 4.3e-27 124.8 109 61.5
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 4.3e-27 124.8 109 61.5
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.1e-26 122.5 77 74.0
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 2.8e-26 122.1 84 73.8
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 3.3e-19 98.6 50 92.0
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 3.3e-19 98.6 98 60.2
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 5.6e-19 97.8 50 96.0
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 5.6e-19 97.8 50 96.0
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 4.9e-15 84.7 77 53.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.8e-09 66.2 80 43.8
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.9e-07 58.9 81 37.0


User provided reference genes

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