Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28570 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 1.2e-58 229.6 111 100.0
AT4G13430 Arabidopsis thaliana HOM05D003112 ORTHO05D003660 3.7e-23 111.7 54 96.3
AL9U10130 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 8.2e-23 110.5 54 94.4
Carub.0007s2912 Capsella rubella HOM05D003112 ORTHO05D003660 8.2e-23 110.5 54 94.4
Thhalv10024960m.g Eutrema salsugineum HOM05D003112 ORTHO05D003660 4.0e-22 108.2 54 92.6
Sp7g10990 Schrenkiella parvula HOM05D003112 ORTHO05D003660 4.0e-22 108.2 54 92.6
BcaC02g09423 Brassica carinata HOM05D003112 ORTHO05D003660 5.3e-22 107.8 67 77.6
C04p42460 Brassica napus HOM05D003112 ORTHO05D003660 5.3e-22 107.8 67 77.6
BolC4t25824H Brassica oleracea HOM05D003112 ORTHO05D003660 5.3e-22 107.8 67 77.6
THA.LOC104808742 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 5.3e-22 107.8 55 90.9
THA.LOC104821631 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 5.3e-22 107.8 55 90.9
BcaB04g17692 Brassica carinata HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
BcaC07g37364 Brassica carinata HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
A08p06810 Brassica napus HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
C08p08140 Brassica napus HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
BolC8t47666H Brassica oleracea HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
BraA08t32699Z Brassica rapa HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
CARHR219070 Cardamine hirsuta HOM05D003112 ORTHO05D003660 9.0e-22 107.1 54 90.7
A04p08700 Brassica napus HOM05D003112 ORTHO05D003660 1.2e-21 106.7 67 76.1
BraA04t16563Z Brassica rapa HOM05D003112 ORTHO05D003660 1.2e-21 106.7 67 76.1
Aa31LG7G1680 Aethionema arabicum HOM05D003112 ORTHO05D003660 1.0e-20 103.6 54 87.0
FAN22G1113 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.0e-20 103.6 61 77.0
SalBow3G1186 Salvia bowleyana HOM05D003112 ORTHO05D003660 1.0e-20 103.6 55 83.6
SalBow3G3468 Salvia bowleyana HOM05D003112 ORTHO05D003660 1.0e-20 103.6 55 83.6
Oeu061871.1 Olea europaea HOM05D003112 ORTHO05D003660 1.7e-20 102.8 55 81.8
Sc19g0005580 Simmondsia chinensis HOM05D003112 ORTHO05D003660 2.2e-20 102.4 55 85.5
FAN12G3900 Fragaria x ananassa HOM05D003112 ORTHO05D003660 2.9e-20 102.1 56 80.4
RcHm_v2.0_Chr4g0395521 Rosa chinensis HOM05D003112 ORTHO05D003660 3.8e-20 101.7 55 81.8
Aqoxy5G00139 Aquilegia oxysepala HOM05D003112 ORTHO05D003660 4.9e-20 101.3 55 81.8
CiPaw.02G106400 Carya illinoinensis HOM05D003112 ORTHO05D003660 4.9e-20 101.3 55 80.0
FAN17G0040 Fragaria x ananassa HOM05D003112 ORTHO05D003660 4.9e-20 101.3 56 78.6
RcHm_v2.0_Chr4g0395531 Rosa chinensis HOM05D003112 ORTHO05D003660 4.9e-20 101.3 55 81.8
SGA_v2.0_scaffold31G12624 Striga asiatica HOM05D003112 ORTHO05D003660 4.9e-20 101.3 54 87.0
BcaB01g03166 Brassica carinata HOM05D003112 ORTHO05D000005 6.5e-20 100.9 54 85.2
PSO764G0258 Papaver somniferum HOM05D003112 ORTHO05D003660 6.5e-20 100.9 55 83.6
PSO832G1505 Papaver somniferum HOM05D003112 ORTHO05D003660 6.5e-20 100.9 55 83.6
Cc03_g06410 Coffea canephora HOM05D003112 ORTHO05D003660 8.4e-20 100.5 55 83.6
FvH4_4g04720 Fragaria vesca HOM05D003112 ORTHO05D003660 8.4e-20 100.5 55 80.0
Duzib151G0757 Durio zibethinus HOM05D003112 ORTHO05D003660 1.1e-19 100.1 55 81.8
SalBow2G1480 Salvia bowleyana HOM05D003112 ORTHO05D003660 1.1e-19 100.1 55 80.0
Thecc.04G265900 Theobroma cacao HOM05D003112 ORTHO05D003660 1.1e-19 100.1 55 81.8
AUR62019663 Chenopodium quinoa HOM05D003112 ORTHO05D003660 1.4e-19 99.8 55 80.0
Ah.04g163950 Amaranthus hybridus HOM05D003112 ORTHO05D003660 1.9e-19 99.4 55 81.8
arahy.Tifrunner.gnm1.ann1.L114HI Arachis hypogaea HOM05D003112 ORTHO05D003660 1.9e-19 99.4 54 83.3
arahy.Tifrunner.gnm1.ann1.RMYF3V Arachis hypogaea HOM05D003112 ORTHO05D003660 1.9e-19 99.4 54 83.3
Migut.G00571 Erythranthe guttata HOM05D003112 ORTHO05D003660 1.9e-19 99.4 55 78.2
FvH4_5g09890 Fragaria vesca HOM05D003112 ORTHO05D003660 1.9e-19 99.4 56 76.8
Gohir.D09G059100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.9e-19 99.4 54 83.3
Gorai.006G073400 Gossypium raimondii HOM05D003112 ORTHO05D003660 1.9e-19 99.4 54 83.3
Prupe.1G049300 Prunus persica HOM05D003112 ORTHO05D003660 1.9e-19 99.4 55 80.0
unitig_736.g22485 Utricularia gibba HOM05D003112 ORTHO05D003660 1.9e-19 99.4 55 81.8
CSS0008180 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 2.5e-19 99.0 86 58.1
Dinv27120 Davidia involucrata HOM05D003112 ORTHO05D003660 2.5e-19 99.0 55 80.0
Rhsim04G0171200 Rhododendron simsii HOM05D003112 ORTHO05D003660 2.5e-19 99.0 55 80.0
AUR62013948 Chenopodium quinoa HOM05D003112 ORTHO05D003660 3.2e-19 98.6 55 78.2
DCAR_024295 Daucus carota HOM05D003112 ORTHO05D003660 3.2e-19 98.6 79 62.0
Glyma.14G217300 Glycine max HOM05D003112 ORTHO05D003660 3.2e-19 98.6 54 81.5
Lalb_Chr23g0271781 Lupinus albus HOM05D003112 ORTHO05D003660 3.2e-19 98.6 55 80.0
Lj6g0010145 Lotus japonicus HOM05D003112 ORTHO05D003660 4.2e-19 98.2 54 81.5
HPP92_007614 Vanilla planifolia HOM05D003112 ORTHO05D003660 4.2e-19 98.2 55 81.8
HPP92_026398 Vanilla planifolia HOM05D003112 ORTHO05D003660 4.2e-19 98.2 55 81.8
CAN.G638.35 Capsicum annuum HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 80.0
CiPaw.02G106200 Carya illinoinensis HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 78.2
Gohir.A09G227100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 78.2
Gohir.D09G228100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 78.2
Gorai.006G250800 Gossypium raimondii HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 78.2
Nitab4.5_0000592g0470 Nicotiana tabacum HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 80.0
Nitab4.5_0002210g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 80.0
Phvul.007G232000 Phaseolus vulgaris HOM05D003112 ORTHO05D003660 5.5e-19 97.8 54 81.5
Psat6g107560 Pisum sativum HOM05D003112 ORTHO05D003660 5.5e-19 97.8 54 79.6
vmacro08560 Vaccinium macrocarpon HOM05D003112 ORTHO05D003660 5.5e-19 97.8 55 80.0
GSVIVG01027922001 Vitis vinifera HOM05D003112 ORTHO05D003660 5.5e-19 97.8 67 71.6
COL.COLO4_15976 Corchorus olitorius HOM05D003112 ORTHO05D003660 7.1e-19 97.4 55 78.2
DCAR_027353 Daucus carota HOM05D003112 ORTHO05D003660 7.1e-19 97.4 55 78.2
Dinv29798 Davidia involucrata HOM05D003112 ORTHO05D003660 7.1e-19 97.4 55 80.0
Solyc03g005730.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 7.1e-19 97.4 55 80.0
Sopen03g001740 Solanum pennellii HOM05D003112 ORTHO05D003660 7.1e-19 97.4 55 80.0
PGSC0003DMG400013459 Solanum tuberosum HOM05D003112 ORTHO05D003660 7.1e-19 97.4 55 80.0
MSTRG.24656 Avicennia marina HOM05D003112 ORTHO05D003660 9.3e-19 97.1 54 79.6
Lsat_1_v5_gn_2_41240 Lactuca sativa HOM05D003112 ORTHO05D003660 9.3e-19 97.1 55 76.4
Manes.15G046300 Manihot esculenta HOM05D003112 ORTHO05D003660 9.3e-19 97.1 55 78.2
PGR004G0234 Punica granatum HOM05D003112 ORTHO05D003660 9.3e-19 97.1 55 78.2
EL10Ac3g06677 Beta vulgaris HOM05D003112 ORTHO05D003660 1.2e-18 96.7 55 78.2
Manes.03G158100 Manihot esculenta HOM05D003112 ORTHO05D003660 1.2e-18 96.7 55 80.0
Cpa.g.sc59.7 Carica papaya HOM05D003112 ORTHO05D003660 1.6e-18 96.3 55 80.0
Cfa014790 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.6e-18 96.3 55 78.2
Glyma.17G256102 Glycine max HOM05D003112 ORTHO05D003660 1.6e-18 96.3 54 79.6
Hma1.2p1_0112F.1_g054810 Hydrangea macrophylla HOM05D003112 ORTHO05D003660 1.6e-18 96.3 55 76.4
QL06p021218 Quercus lobata HOM05D003112 ORTHO05D003660 1.6e-18 96.3 54 75.9
Hund24873 Selenicereus undatus HOM05D003112 ORTHO05D003660 1.6e-18 96.3 55 80.0
TWI73G0266 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 1.6e-18 96.3 55 76.4
VMungo0720G0086 Vigna mungo HOM05D003112 ORTHO05D003660 1.6e-18 96.3 54 79.6
Lj3A640T23 Lonicera japonica HOM05D003112 ORTHO05D003660 2.1e-18 95.9 55 78.2
MD13G1222900 Malus domestica HOM05D003112 ORTHO05D003660 2.1e-18 95.9 55 74.5
CANSAT78G1988 Cannabis sativa HOM05D003112 ORTHO05D003660 2.7e-18 95.5 55 76.4
CiPaw.01G177200 Carya illinoinensis HOM05D003112 ORTHO05D003660 2.7e-18 95.5 54 77.8
Ca_11883_v3 Cicer arietinum L. HOM05D003112 ORTHO05D003660 2.7e-18 95.5 54 77.8
Ciclev10004776m.g Citrus clementina HOM05D003112 ORTHO05D003660 2.7e-18 95.5 55 76.4
Lsat_1_v5_gn_1_75540 Lactuca sativa HOM05D003112 ORTHO05D003660 2.7e-18 95.5 60 73.3
TPR.G23961 Trifolium pratense HOM05D003112 ORTHO05D003660 2.7e-18 95.5 54 77.8
TAR362G0704 Trochodendron aralioides HOM05D003112 ORTHO05D003660 3.5e-18 95.1 55 78.2
ECA248G1257 Erigeron canadensis HOM05D003112 ORTHO05D003660 4.6e-18 94.7 53 81.1
Eucgr.H02913 Eucalyptus grandis HOM05D003112 ORTHO05D003660 4.6e-18 94.7 55 78.2
Lalb_Chr11g0067221 Lupinus albus HOM05D003112 ORTHO05D003660 4.6e-18 94.7 54 79.6
Nitab4.5_0001041g0170 Nicotiana tabacum HOM05D003112 ORTHO05D003660 6.0e-18 94.4 54 77.8
GSVIVG01029978001 Vitis vinifera HOM05D003112 ORTHO05D003660 6.0e-18 94.4 55 74.5
Atru.chr4.1907 Acer truncatum HOM05D003112 ORTHO05D003660 7.9e-18 94.0 55 74.5
CSS0035703 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 7.9e-18 94.0 55 76.4
HanXRQChr01g0023041 Helianthus annuus HOM05D003112 ORTHO05D003660 7.9e-18 94.0 54 77.8
Medtr1g045750 Medicago truncatula HOM05D003112 ORTHO05D003660 7.9e-18 94.0 54 75.9
HanXRQChr14g0434761 Helianthus annuus HOM05D003112 ORTHO05D003660 1.0e-17 93.6 54 74.1
MD16G1227200 Malus domestica HOM05D003112 ORTHO05D003660 1.0e-17 93.6 55 74.5
Peaxi162Scf01044g00008 Petunia axillaris HOM05D003112 ORTHO05D003660 1.0e-17 93.6 73 60.3
Potri.010G065100 Populus trichocarpa HOM05D003112 ORTHO05D003660 1.0e-17 93.6 54 74.1
Sabra10G0042000 Salix brachista HOM05D003112 ORTHO05D003660 1.0e-17 93.6 54 74.1
ECA248G0532 Erigeron canadensis HOM05D003112 ORTHO05D003660 1.3e-17 93.2 53 79.2
HanXRQChr14g0434771 Helianthus annuus HOM05D003112 ORTHO05D003660 1.3e-17 93.2 54 74.1
Sed0016595 Sechium edule HOM05D003112 ORTHO05D003660 1.3e-17 93.2 55 72.7
Zm00001eb208760 Zea mays HOM05D003112 ORTHO05D003660 1.3e-17 93.2 54 77.8
Zm00001eb230780 Zea mays HOM05D003112 ORTHO05D003660 1.3e-17 93.2 54 75.9
CDE09G0390 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 1.8e-17 92.8 55 76.4
Haze_11466 Corylus avellana HOM05D003112 ORTHO05D003660 1.8e-17 92.8 56 73.2
Os02g0125100 Oryza sativa ssp. japonica HOM05D003112 ORTHO05D003660 1.8e-17 92.8 54 77.8
SHI00769 Sapria himalayana HOM05D003112 ORTHO05D003660 1.8e-17 92.8 55 74.5
ATR0787G024 Amborella trichopoda HOM05D003112 ORTHO05D003660 2.3e-17 92.4 56 75.0
Gohir.A09G059800 Gossypium hirsutum HOM05D003112 ORTHO05D003660 2.3e-17 92.4 50 82.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.3e-17 92.4 55 72.7
Psat3g068240 Pisum sativum HOM05D003112 ORTHO05D003660 2.3e-17 92.4 54 75.9
FAN17G2284 Fragaria x ananassa HOM05D003112 ORTHO05D003660 3.0e-17 92.0 50 82.0
Nn3g19795 Nelumbo nucifera HOM05D003112 ORTHO05D003660 3.0e-17 92.0 54 77.8
Mapoly0081s0061 Marchantia polymorpha HOM05D003112 ORTHO05D003660 3.9e-17 91.7 54 77.8
AagrBONN_evm.TU.Sc2ySwM_368.2484 Anthoceros agrestis HOM05D003112 ORTHO05D003660 5.1e-17 91.3 53 75.5
MELO3C003344.2 Cucumis melo HOM05D003112 ORTHO05D003660 5.1e-17 91.3 55 72.7
CsaV3_3G049730 Cucumis sativus L. HOM05D003112 ORTHO05D003660 5.1e-17 91.3 55 72.7
SMO347G0250 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 5.1e-17 91.3 53 77.4
ClCG09G012580 Citrullus lanatus HOM05D003112 ORTHO05D003660 6.7e-17 90.9 55 72.7
SEGI_25287 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 8.7e-17 90.5 53 77.4
ATR0787G215 Amborella trichopoda HOM05D003112 ORTHO05D003660 1.1e-16 90.1 55 76.4
Lj3A639T17 Lonicera japonica HOM05D003112 ORTHO05D003660 1.1e-16 90.1 54 74.1
Peaxi162Scf01044g00110 Petunia axillaris HOM05D003112 ORTHO05D003660 1.1e-16 90.1 54 74.1
Dinv19267 Davidia involucrata HOM05D003112 ORTHO05D003660 1.9e-16 89.4 55 72.7
Atru.chr4.1904 Acer truncatum HOM05D003112 ORTHO05D003660 2.5e-16 89.0 55 70.9
CBR_g53549 Chara braunii HOM05D003112 ORTHO05D003660 2.5e-16 89.0 53 73.6
Potri.008G172500 Populus trichocarpa HOM05D003112 ORTHO05D003660 2.5e-16 89.0 53 77.4
Solyc09g090900.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 3.3e-16 88.6 55 72.7
Sopen09g033880 Solanum pennellii HOM05D003112 ORTHO05D003660 3.3e-16 88.6 55 72.7
Cfa014789 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.3e-16 88.2 56 67.9
Sabra08G0131800 Salix brachista HOM05D003112 ORTHO05D003660 4.3e-16 88.2 53 75.5
TWI09G1061 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 4.3e-16 88.2 53 75.5
Nitab4.5_0001041g0160 Nicotiana tabacum HOM05D003112 ORTHO05D003660 7.4e-16 87.4 55 69.1
CAN.G524.11 Capsicum annuum HOM05D003112 ORTHO05D003660 9.7e-16 87.0 55 70.9
Nitab4.5_0002613g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 9.7e-16 87.0 50 76.0
Lj3C639T4 Lonicera japonica HOM05D003112 ORTHO05D003660 1.3e-15 86.7 51 76.5
Manes.03G158200 Manihot esculenta HOM05D003112 ORTHO05D003660 1.3e-15 86.7 55 72.7
Pp3c4_11270 Physcomitrium patens HOM05D003112 ORTHO05D003660 1.6e-15 86.3 55 69.1
Thecc.04G265800 Theobroma cacao HOM05D003112 ORTHO05D003660 1.6e-15 86.3 54 74.1
TAR633G1760 Trochodendron aralioides HOM05D003112 ORTHO05D003660 2.2e-15 85.9 55 69.1
Peaxi162Scf01044g00224 Petunia axillaris HOM05D003112 ORTHO05D003660 3.7e-15 85.1 54 72.2
MBI10_g16830_MAGBIO Magnolia biondii HOM05D003112 ORTHO05D003660 4.8e-15 84.7 55 69.1
COL.COLO4_15975 Corchorus olitorius HOM05D003112 ORTHO05D003660 6.3e-15 84.3 55 70.9
Duzib151G1146 Durio zibethinus HOM05D003112 ORTHO05D003660 1.1e-14 83.6 55 70.9
Cre01.g004500 Chlamydomonas reinhardtii HOM05D003112 ORTHO05D003660 1.4e-14 83.2 53 69.8
Haze_22165 Corylus avellana HOM05D003112 ORTHO05D003660 4.1e-14 81.6 46 80.4
Gohir.D09G059000 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.5e-13 79.7 55 63.6
Gorai.006G073300 Gossypium raimondii HOM05D003112 ORTHO05D003660 2.0e-13 79.3 55 63.6
Medtr1g073200 Medicago truncatula HOM05D003112 ORTHO05D003660 2.0e-13 79.3 79 53.2
Gohir.A09G059700 Gossypium hirsutum HOM05D003112 ORTHO05D003660 3.4e-13 78.6 55 61.8
arahy.Tifrunner.gnm1.ann1.F7U1GP Arachis hypogaea HOM05D003112 ORTHO05D003660 1.1e-11 73.6 54 64.8
arahy.Tifrunner.gnm1.ann1.K9LPZT Arachis hypogaea HOM05D003112 ORTHO05D003660 1.1e-11 73.6 54 63.0
TPR.G28479 Trifolium pratense HOM05D003112 ORTHO05D003660 5.5e-11 71.2 52 65.4
Glyma.20G199600 Glycine max HOM05D003112 ORTHO05D003660 1.2e-10 70.1 68 54.4
Nitab4.5_0005154g0020 Nicotiana tabacum HOM05D003112 ORTHO05D003660 2.7e-10 68.9 40 70.0
Haze_11468 Corylus avellana HOM05D001145 ORTHO05D001415 3.6e-10 68.6 38 81.6
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 3.6e-10 68.6 54 59.3
Lj5g0009083 Lotus japonicus HOM05D003112 ORTHO05D003660 4.6e-10 68.2 54 61.1
Peaxi162Scf00242g01317 Petunia axillaris HOM05D003112 ORTHO05D003660 6.9e-06 54.3 29 86.2


User provided reference genes

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