Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1328.2 646 100.0
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1308.5 646 98.8
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1297.3 644 97.7
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1286.2 644 96.6
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1284.6 647 96.9
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1281.9 644 96.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1278.5 647 96.4
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1277.3 646 96.1
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1276.9 647 96.3
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1275.0 647 96.0
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1275.0 647 96.0
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1267.7 647 95.4
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1211.8 647 89.6
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 653 87.9
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 653 87.7
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 649 88.0
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1186.4 650 87.4
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 652 87.4
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1184.5 648 88.0
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 644 87.0
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1182.2 653 87.3
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 649 87.2
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 650 87.1
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 653 87.0
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 649 86.9
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 646 87.9
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 652 86.8
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 649 86.7
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 649 86.3
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1174.5 648 86.6
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 652 86.5
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 648 86.3
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 649 86.7
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 649 86.7
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 648 86.7
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 649 86.7
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 649 85.7
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 648 86.4
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 642 86.4
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1164.8 648 86.6
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 649 86.3
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 648 86.1
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 643 86.2
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 649 85.4
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1162.1 648 84.7
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1161.4 649 84.7
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 647 85.9
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 649 84.7
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 648 85.3
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 649 86.4
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1157.5 648 85.2
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1157.5 646 85.9
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 646 86.2
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 645 85.7
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 648 84.7
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1151.7 645 85.4
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 649 86.1
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 649 85.5
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 645 85.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 649 85.7
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 643 85.4
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 649 84.6
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1146.7 647 84.7
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 650 84.6
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 650 84.8
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 648 84.4
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 646 85.1
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1142.9 650 83.5
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 648 84.1
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 650 85.2
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 643 84.9
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 593 91.2
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 639 85.3
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 643 84.8
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 619 88.4
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 644 84.9
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1138.6 644 84.9
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 644 84.0
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 644 83.9
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 649 83.4
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1136.7 597 90.8
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 650 85.1
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 645 84.7
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 641 84.4
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1134.0 645 85.3
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1134.0 644 84.8
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 646 85.0
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 649 84.7
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1131.7 643 84.0
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1131.3 646 84.4
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1127.5 645 83.6
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1124.4 653 83.6
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1124.0 650 82.3
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1121.7 643 84.6
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1113.6 711 77.1
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1110.9 644 82.0
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1095.9 591 87.5
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1094.3 644 82.5
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1089.7 618 83.7
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1082.8 638 81.3
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1081.6 644 82.1
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.3e-311 1072.4 594 86.9
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 2.6e-310 1068.1 651 79.0
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 6.1e-304 1047.0 648 79.6
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 5.7e-302 1040.4 599 83.8
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 8.3e-301 1036.6 602 82.9
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.1e-297 1026.2 571 84.9
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.1e-297 1026.2 666 74.9
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.7e-296 1020.8 580 83.4
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 6.1e-296 1020.4 541 88.0
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 8.6e-290 1000.0 563 83.1
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 8.0e-288 993.4 553 83.7
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 8.9e-287 989.9 611 78.7
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 2.4e-252 875.5 475 86.5
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 2.1e-227 792.7 547 70.0
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 1.4e-199 700.3 389 86.9
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 2.7e-187 659.4 395 80.8
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 3.6e-187 659.1 581 58.0
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 2.4e-151 540.0 267 96.3
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.9e-125 453.0 551 47.4
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.5e-71 274.2 217 62.2
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.4e-69 268.5 125 96.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 2.4e-42 177.9 101 81.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 2.3e-40 171.4 97 82.5
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.2e-36 159.1 151 55.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 5.8e-36 156.8 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.4e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 4.9e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 2.5e-07 61.6 32 84.4


User provided reference genes

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