Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.4e-101 372.9 182 100.0
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 5.8e-34 148.3 124 60.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 7.6e-34 147.9 124 60.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 7.6e-34 147.9 124 60.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 9.9e-34 147.5 124 60.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 9.9e-34 147.5 124 60.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 9.9e-34 147.5 124 60.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 9.9e-34 147.5 124 60.5
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 9.9e-34 147.5 124 61.3
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.7e-33 146.7 124 59.7
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.7e-33 146.7 124 58.1
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 2.9e-33 146.0 124 58.9
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.9e-33 146.0 124 58.1
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 2.9e-33 146.0 124 58.9
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 3.8e-33 145.6 124 58.1
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 3.8e-33 145.6 124 58.1
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 6.4e-33 144.8 124 58.9
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 6.4e-33 144.8 124 57.3
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 6.4e-33 144.8 124 58.1
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 8.4e-33 144.4 124 58.1
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 8.4e-33 144.4 124 58.1
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 8.4e-33 144.4 126 57.1
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.4e-33 144.4 124 59.7
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-32 144.1 124 58.9
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 1.1e-32 144.1 124 58.9
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.1e-32 144.1 122 60.7
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.1e-32 144.1 124 58.1
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.4e-32 143.7 124 58.1
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.4e-32 143.7 124 58.1
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.4e-32 143.7 124 58.9
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.9e-32 143.3 124 57.3
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 1.9e-32 143.3 124 57.3
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.9e-32 143.3 124 57.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.9e-32 143.3 124 57.3
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 2.4e-32 142.9 124 57.3
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.4e-32 142.9 124 57.3
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 2.4e-32 142.9 124 58.1
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-32 142.5 124 58.1
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.2e-32 142.5 124 57.3
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.2e-32 142.5 124 57.3
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.2e-32 142.5 122 58.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 3.2e-32 142.5 124 58.1
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 4.1e-32 142.1 124 56.5
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 4.1e-32 142.1 124 57.3
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 4.1e-32 142.1 124 57.3
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.1e-32 142.1 124 57.3
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 4.1e-32 142.1 124 57.3
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 5.4e-32 141.7 124 57.3
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 5.4e-32 141.7 124 57.3
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 7.1e-32 141.4 124 57.3
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 7.1e-32 141.4 124 56.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 7.1e-32 141.4 124 56.5
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 9.2e-32 141.0 124 57.3
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 9.2e-32 141.0 124 57.3
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 9.2e-32 141.0 124 56.5
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 9.2e-32 141.0 124 57.3
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-31 140.6 124 58.1
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.2e-31 140.6 124 58.1
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 1.2e-31 140.6 124 56.5
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.6e-31 140.2 124 56.5
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.6e-31 140.2 124 56.5
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.6e-31 140.2 124 56.5
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.1e-31 139.8 124 57.3
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 2.1e-31 139.8 124 56.5
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.1e-31 139.8 122 57.4
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.1e-31 139.8 124 55.6
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 2.7e-31 139.4 124 56.5
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.7e-31 139.4 124 56.5
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 2.7e-31 139.4 124 55.6
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 3.5e-31 139.0 124 56.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 3.5e-31 139.0 124 55.6
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.5e-31 139.0 124 56.5
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 4.6e-31 138.7 122 56.6
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 4.6e-31 138.7 124 54.8
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.0e-31 138.3 124 55.6
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.0e-31 138.3 124 55.6
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 6.0e-31 138.3 124 55.6
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 7.8e-31 137.9 124 55.6
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.8e-31 137.9 110 61.8
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.0e-30 137.5 124 55.6
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 1.0e-30 137.5 124 55.6
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-30 137.1 125 57.6
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.3e-30 137.1 124 56.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.3e-30 137.1 124 54.8
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.3e-30 137.1 124 54.8
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 1.3e-30 137.1 123 56.1
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.7e-30 136.7 124 54.8
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.3e-30 136.3 122 55.7
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 3.9e-30 135.6 124 54.8
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.1e-30 135.2 122 55.7
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.1e-30 135.2 122 55.7
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 6.6e-30 134.8 148 50.7
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 8.6e-30 134.4 124 55.6
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 8.6e-30 134.4 124 54.0
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.6e-30 134.4 124 54.0
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 8.6e-30 134.4 124 54.0
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 8.6e-30 134.4 124 53.2
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.1e-29 134.0 122 54.9
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.5e-29 133.7 110 59.1
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.5e-29 133.7 124 54.0
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.5e-29 133.7 124 54.0
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.9e-29 133.3 124 54.8
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 3.3e-29 132.5 124 54.0
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 5.6e-29 131.7 124 53.2
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.2e-28 130.6 125 56.0
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 1.6e-28 130.2 125 56.0
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.1e-28 129.8 139 52.5
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 3.6e-28 129.0 125 55.2
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.8e-27 126.7 123 55.3
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 3.1e-27 125.9 124 54.8
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.2e-27 125.2 125 53.6
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 6.9e-27 124.8 123 55.3
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 6.9e-27 124.8 124 54.0
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 1.2e-26 124.0 123 55.3
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.2e-26 124.0 123 52.8
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.5e-26 123.6 123 54.5
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 2.6e-26 122.9 124 53.2
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 2.6e-26 122.9 139 51.1
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 5.8e-26 121.7 123 51.2
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 7.6e-26 121.3 124 52.4
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.7e-25 120.2 127 52.0
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.7e-25 120.2 127 52.0
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 6.4e-25 118.2 124 51.6
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 6.4e-25 118.2 112 56.2
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 8.4e-25 117.9 167 41.9
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 8.4e-25 117.9 123 50.4
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 8.4e-25 117.9 125 50.4
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.9e-24 116.7 123 50.4
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.4e-24 116.3 124 53.2
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.4e-24 116.3 123 50.4
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 2.4e-24 116.3 125 51.2
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-24 115.9 123 52.8
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 3.2e-24 115.9 123 53.7
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-23 114.0 123 52.8
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.2e-23 114.0 93 59.1
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-23 113.6 123 52.8
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 1.6e-23 113.6 123 52.8
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.1e-23 113.2 123 52.8
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 7.8e-23 111.3 123 52.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 7.8e-23 111.3 123 52.0
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-22 110.9 123 52.0
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-22 110.9 123 52.0
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-22 110.9 123 52.0
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.3e-22 110.5 125 52.8
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.7e-22 110.2 123 47.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.1e-21 107.5 123 48.8
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 7.3e-21 104.8 123 45.5
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-20 103.6 109 51.4
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.1e-20 103.2 82 61.0
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.2e-20 101.7 108 50.9
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.0e-19 97.8 83 55.4
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.0e-18 96.7 129 47.3
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.5e-18 95.5 109 49.5
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-17 94.0 85 54.1
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 8.4e-17 91.3 112 45.5
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.6e-15 87.0 73 57.5
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 5.1e-14 82.0 111 43.2
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 3.3e-13 79.3 124 39.5
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.3e-12 77.4 124 37.9
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 1.6e-12 77.0 124 37.9
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 1.6e-12 77.0 74 52.7
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.8e-12 76.3 124 37.9
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 3.6e-12 75.9 125 40.0
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 4.8e-12 75.5 59 62.7
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 4.8e-12 75.5 73 52.1
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.1e-12 74.7 89 46.1
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.8e-11 73.6 123 33.3
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 2.0e-10 70.1 73 50.7
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.9e-09 65.5 92 43.5
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 6.4e-09 65.1 135 37.0
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 4.2e-08 62.4 51 56.9
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 9.3e-08 61.2 52 55.8
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 9.3e-08 61.2 134 34.3
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.2e-07 60.8 54 53.7
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 2.7e-07 59.7 70 45.7
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-07 58.9 70 44.3
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 1.0e-06 57.8 51 54.9


User provided reference genes

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