Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.1e-122 443.4 224 100.0
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 7.0e-114 414.1 224 92.4
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 7.5e-108 394.0 224 88.8
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.1e-106 388.3 228 86.8
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.3e-104 383.3 210 93.3
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.1e-103 380.2 230 84.8
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.3e-93 345.9 228 81.1
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 2.3e-93 345.9 228 80.7
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 6.8e-93 344.4 228 80.7
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.5e-92 343.2 228 80.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.4e-92 342.0 228 80.3
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.2e-91 339.3 256 71.1
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 2.9e-88 328.9 200 84.0
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.1e-79 300.4 186 86.6
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 4.9e-75 285.0 235 63.4
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 5.4e-74 281.6 231 64.9
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.0e-74 281.2 235 62.1
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.2e-73 280.4 235 62.6
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.6e-73 278.5 235 61.7
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.7e-72 276.6 235 62.1
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.7e-72 276.6 238 64.7
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 3.0e-72 275.8 233 63.5
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 3.9e-72 275.4 238 61.8
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 5.0e-72 275.0 229 64.2
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.5e-71 273.5 235 61.7
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.9e-71 273.1 232 61.6
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.9e-71 273.1 232 61.6
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 4.3e-71 271.9 237 62.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 4.3e-71 271.9 233 63.1
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 7.3e-71 271.2 235 61.3
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 7.3e-71 271.2 236 61.4
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 7.3e-71 271.2 237 62.0
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 1.2e-70 270.4 237 61.2
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 6.2e-70 268.1 239 61.1
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.8e-69 266.5 240 59.6
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.8e-69 266.5 237 61.6
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.1e-69 265.8 225 62.2
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.1e-69 265.8 231 61.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 4.0e-69 265.4 234 61.1
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.2e-68 263.8 224 61.6
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.2e-68 263.8 239 61.5
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.5e-68 263.5 234 59.4
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.5e-68 263.5 237 59.1
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 5.8e-68 261.5 228 60.1
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 7.5e-68 261.2 226 62.8
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.5e-68 261.2 238 60.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 9.8e-68 260.8 237 59.9
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.7e-67 260.0 238 61.3
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.9e-67 259.2 220 60.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 4.9e-67 258.5 233 60.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 6.4e-67 258.1 235 59.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 6.4e-67 258.1 240 59.6
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 8.3e-67 257.7 239 58.6
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.1e-66 257.3 237 58.6
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.4e-66 256.9 238 57.6
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.4e-66 256.9 239 58.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.9e-66 256.5 239 59.4
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.4e-66 256.1 237 59.1
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.4e-66 256.1 230 60.0
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 4.1e-66 255.4 203 64.0
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.1e-66 255.4 239 57.7
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 4.1e-66 255.4 226 60.2
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.2e-65 253.8 232 59.1
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.7e-65 252.7 238 58.4
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 3.5e-65 252.3 239 57.3
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 4.6e-65 251.9 228 59.6
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 4.6e-65 251.9 197 63.5
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 7.8e-65 251.1 237 57.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.7e-64 250.0 239 58.6
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.3e-64 249.6 230 57.8
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.3e-64 249.6 205 62.4
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 4.3e-63 245.4 236 55.5
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 5.6e-63 245.0 278 53.6
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.2e-62 243.8 239 57.3
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.6e-62 243.4 235 55.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.1e-62 243.0 239 57.7
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.1e-62 241.1 239 56.5
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.3e-61 239.6 222 58.6
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 5.2e-61 238.4 233 56.2
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 8.9e-61 237.7 236 56.8
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.0e-60 236.5 232 55.6
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 2.6e-60 236.1 161 74.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.3e-59 233.8 241 53.9
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 2.9e-59 232.6 180 63.9
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.9e-59 232.6 198 61.1
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.4e-58 229.6 227 54.6
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 3.2e-58 229.2 226 56.6
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 7.1e-58 228.0 200 59.0
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.1e-55 220.7 214 57.9
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.2e-54 217.2 130 76.2
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 8.1e-54 214.5 188 58.5
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 8.1e-54 214.5 212 56.6
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 2.0e-52 209.9 122 82.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.9e-51 206.1 235 51.9
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 8.4e-51 204.5 227 52.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.4e-50 203.8 195 56.9
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.2e-50 202.6 235 52.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.4e-50 201.8 212 55.2
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 9.3e-50 201.1 226 52.2
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.2e-49 200.7 261 46.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.1e-46 189.9 238 49.2
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.1e-45 187.6 203 54.2
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.4e-45 187.2 255 45.5
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 4.0e-45 185.7 239 46.4
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.9e-42 176.8 224 46.9
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.1e-42 174.9 200 52.0
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 3.5e-41 172.6 255 42.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.0e-40 171.0 96 76.0
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.0e-40 171.0 204 47.5
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.1e-39 167.5 178 52.2
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 9.6e-39 164.5 185 54.1
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.3e-38 164.1 182 52.7
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 2.1e-38 163.3 228 45.2
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.1e-38 163.3 185 53.0
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.1e-38 163.3 112 66.1
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 4.0e-37 159.1 182 53.8
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.2e-35 153.3 180 48.9
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.1e-26 124.4 78 74.4
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 8.7e-24 114.8 75 84.0
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.1e-22 110.2 57 80.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 6.3e-22 108.6 70 72.9
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 4.1e-21 105.9 169 40.8
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 6.5e-19 98.6 171 38.6
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.2e-17 94.4 49 87.8
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 2.1e-17 93.6 106 47.2
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 2.7e-17 93.2 67 58.2
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.9e-15 87.0 50 72.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.1e-13 81.3 58 67.2
C04p56940 Brassica napus HOM05D057202 ORTHO05D041615 1.3e-11 74.3 64 64.1
BolC4t27231H Brassica oleracea HOM05D057202 ORTHO05D041615 1.3e-11 74.3 64 64.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.0e-11 72.4 73 57.5
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 6.5e-11 72.0 48 70.8
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-10 70.9 48 70.8
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.2e-10 69.7 56 66.1
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.2e-10 69.3 48 68.8
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 7.2e-10 68.6 56 62.5
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.0e-08 63.2 43 67.4
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 6.7e-08 62.0 29 96.6
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.7e-08 62.0 43 67.4
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 8.2e-06 55.1 42 57.1


User provided reference genes

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