Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 8.1e-123 443.7 220 100.0
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.1e-119 431.4 220 97.3
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.7e-115 417.9 220 93.2
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.1e-114 415.2 220 93.2
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 6.4e-112 407.5 220 89.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.2e-110 403.3 220 88.6
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.8e-107 392.1 220 85.0
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.8e-106 387.5 221 85.1
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 4.4e-105 384.8 221 84.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 4.4e-105 384.8 221 84.6
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.2e-102 376.7 221 82.4
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-100 370.2 216 83.8
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.1e-99 365.9 220 77.7
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.8e-99 364.8 218 80.7
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 8.1e-99 364.0 216 81.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.2e-97 360.1 216 80.6
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.6e-97 359.0 220 80.9
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.7e-96 356.3 218 76.6
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.9e-96 355.5 218 77.5
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 4.9e-96 354.8 222 75.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.9e-95 352.8 218 76.6
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.2e-95 352.1 215 75.8
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.2e-95 352.1 215 75.8
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.4e-95 351.3 216 76.9
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 7.1e-95 350.9 218 76.1
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.6e-94 348.2 240 72.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 7.9e-94 347.4 222 74.8
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 7.9e-94 347.4 215 73.5
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.0e-93 347.1 218 74.8
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 3.0e-93 345.5 218 73.9
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.9e-93 345.1 218 72.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 5.1e-93 344.7 218 72.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 8.7e-93 344.0 220 75.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.7e-93 344.0 215 72.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-92 343.2 218 74.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.9e-92 342.8 218 74.8
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.3e-92 342.0 219 72.1
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.3e-92 342.0 215 73.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 4.3e-92 341.7 217 73.7
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.3e-92 341.7 218 72.9
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.1e-91 339.3 220 72.3
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.8e-91 339.0 220 76.4
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 2.8e-91 339.0 218 71.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 2.8e-91 339.0 219 71.7
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.8e-91 339.0 218 72.5
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 3.6e-91 338.6 218 71.1
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 6.2e-91 337.8 218 72.5
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 8.1e-91 337.4 219 74.0
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 9.0e-90 334.0 215 71.2
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.0e-90 334.0 217 72.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-89 332.8 217 72.4
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-89 332.4 217 72.4
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.4e-89 332.0 255 65.1
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.4e-89 332.0 255 65.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.5e-89 331.6 221 72.9
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 9.9e-89 330.5 213 72.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.2e-88 329.3 220 70.9
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 8.4e-88 327.4 250 66.4
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.1e-87 327.0 221 70.1
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.1e-87 327.0 215 72.6
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.4e-87 326.6 237 68.8
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.5e-86 322.0 217 71.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 7.9e-86 320.9 219 65.3
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.0e-85 320.5 220 70.5
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.3e-85 320.1 218 67.9
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.9e-85 318.5 218 66.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.9e-85 318.5 221 69.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.9e-85 318.5 215 67.4
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 5.1e-85 318.2 218 67.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 5.1e-85 318.2 218 71.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 6.7e-85 317.8 220 65.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.9e-84 316.2 214 64.5
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.3e-84 315.1 218 66.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 4.8e-83 311.6 220 65.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 2.4e-82 309.3 260 58.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 3.1e-82 308.9 216 65.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 9.0e-82 307.4 220 62.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 9.0e-82 307.4 215 67.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-81 305.8 219 61.6
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 4.5e-81 305.1 215 64.2
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.6e-81 304.3 210 70.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 7.6e-81 304.3 217 65.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.0e-80 303.9 215 65.1
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-80 302.8 220 64.5
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-80 302.8 220 64.5
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-80 302.8 220 64.5
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 2.2e-80 302.8 215 63.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.8e-80 302.0 213 65.3
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.9e-79 299.7 245 58.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.7e-78 295.8 215 62.8
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 4.6e-78 295.0 215 62.3
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.8e-77 293.1 217 60.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.9e-77 292.0 215 60.9
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.1e-77 291.6 215 59.5
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.7e-77 290.8 215 60.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.5e-76 290.0 216 61.6
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.3e-76 288.5 217 60.4
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.6e-76 287.3 197 66.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.3e-75 287.0 217 60.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.7e-75 285.4 202 63.9
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.7e-72 276.6 178 71.3
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-71 273.5 216 59.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-71 272.7 215 60.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.1e-70 269.6 213 62.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.4e-66 256.1 225 52.4
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 9.0e-66 254.2 225 51.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.6e-65 252.7 169 73.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.9e-63 246.5 170 68.8
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-63 245.7 215 55.8
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-62 241.9 185 62.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.4e-61 240.4 158 71.5
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.4e-61 240.4 141 78.7
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.7e-61 238.0 182 61.0
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 7.4e-60 234.6 190 61.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 9.7e-60 234.2 219 55.3
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-59 233.8 141 78.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-59 231.9 221 52.9
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.1e-58 229.2 168 63.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 5.3e-58 228.4 213 46.0
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 9.1e-58 227.6 161 65.8
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 9.1e-58 227.6 161 65.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-57 227.3 142 75.4
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-57 226.5 169 62.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.5e-57 225.3 210 46.2
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-56 224.2 214 52.3
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.7e-56 223.4 211 49.8
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 7.4e-52 208.0 159 61.6
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 7.4e-52 208.0 203 47.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.3e-51 207.2 212 43.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-51 206.1 165 61.2
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-50 203.8 168 58.9
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-49 200.7 143 65.7
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.5e-47 193.7 191 45.5
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.9e-47 193.4 220 37.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 6.7e-45 184.9 149 61.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-44 183.3 203 46.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-44 183.0 166 54.8
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-43 179.5 122 70.5
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.8e-42 176.8 133 63.2
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.0e-38 161.4 124 61.3
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 2.3e-37 159.8 128 64.8
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 4.4e-36 155.6 160 50.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.4e-36 155.6 133 57.1
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-35 153.7 123 61.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-34 149.4 134 53.0
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.0e-32 142.1 117 59.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 4.4e-28 129.0 101 61.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.3e-27 125.2 71 91.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.9e-23 113.6 91 61.5
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-23 112.8 143 43.4
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-19 100.5 66 65.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.9e-19 99.8 78 60.3
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.7e-19 99.4 52 78.8
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.5e-15 86.7 82 56.1
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 3.3e-15 86.3 52 67.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-14 84.3 74 50.0
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.2e-14 82.0 54 81.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.2e-14 82.0 54 81.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 6.8e-13 78.6 53 79.2
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 3.7e-11 72.8 162 29.6
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.9e-10 70.5 97 41.2
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-10 68.9 106 38.7


User provided reference genes

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