Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.0e-135 485.7 242 100.0
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.7e-132 475.3 242 96.7
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 8.3e-121 437.2 242 89.7
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.3e-118 429.9 242 86.8
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.2e-113 412.5 242 86.0
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.9e-113 411.4 242 84.7
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.4e-112 409.1 242 85.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.4e-112 409.1 242 85.1
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 9.2e-112 407.1 242 84.7
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.5e-111 405.2 242 84.3
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.7e-110 402.9 242 82.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 5.0e-110 401.4 242 84.3
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.5e-109 399.8 242 80.6
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 9.5e-109 397.1 242 83.1
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.2e-108 394.4 242 80.6
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.2e-108 394.4 242 80.6
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.2e-98 363.6 239 73.2
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.5e-98 363.2 241 74.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.7e-97 359.8 239 73.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.4e-96 356.7 239 73.6
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.9e-96 356.3 239 72.4
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.4e-96 355.9 239 72.4
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.1e-96 355.1 239 72.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 5.4e-96 354.8 236 71.6
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 7.1e-96 354.4 238 72.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.2e-95 353.6 239 73.2
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.2e-95 353.6 239 72.4
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 2.1e-95 352.8 239 72.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.7e-95 352.4 239 72.0
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 2.7e-95 352.4 235 73.2
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.7e-95 352.4 232 74.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.5e-95 352.1 235 71.9
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 3.5e-95 352.1 239 72.0
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.5e-95 352.1 239 70.3
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 3.5e-95 352.1 239 71.1
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 6.0e-95 351.3 239 71.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 6.0e-95 351.3 239 71.1
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 6.0e-95 351.3 239 70.7
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 71.5
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.0e-94 350.5 239 71.1
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.0e-94 349.0 239 72.8
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 5.1e-94 348.2 239 71.1
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 6.6e-94 347.8 239 69.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.5e-93 346.7 230 73.5
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.9e-93 346.3 240 71.2
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.9e-93 346.3 239 70.7
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.5e-93 345.9 239 69.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.5e-93 345.9 239 70.7
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 3.3e-93 345.5 239 70.7
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.6e-93 344.7 239 69.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.3e-93 344.4 239 67.8
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 7.3e-93 344.4 239 69.0
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 7.3e-93 344.4 239 69.9
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 4.7e-92 341.7 235 70.6
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 6.2e-92 341.3 239 69.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.1e-92 340.9 234 72.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 8.1e-92 340.9 232 70.7
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.4e-91 340.1 234 70.1
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.8e-91 339.7 272 65.4
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.8e-91 339.7 239 70.7
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.8e-91 339.7 240 68.3
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 3.1e-91 339.0 239 66.9
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-91 339.0 234 71.4
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 3.1e-91 339.0 236 70.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.1e-91 339.0 232 71.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 4.0e-91 338.6 234 70.9
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 4.0e-91 338.6 233 68.7
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 5.2e-91 338.2 193 85.5
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.2e-91 338.2 234 71.8
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 6.8e-91 337.8 226 70.4
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 6.8e-91 337.8 264 63.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.8e-91 337.8 234 70.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 6.8e-91 337.8 234 69.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 8.9e-91 337.4 234 69.7
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 8.9e-91 337.4 233 68.2
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.5e-90 336.7 232 70.7
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 2.0e-90 336.3 234 69.2
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.6e-90 334.3 220 73.2
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 7.6e-90 334.3 240 65.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 9.9e-90 334.0 242 73.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.7e-89 333.2 234 69.2
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.7e-89 333.2 236 67.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 2.2e-89 332.8 239 67.8
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 2.2e-89 332.8 211 78.2
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 8.4e-89 330.9 258 63.6
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.4e-88 328.2 240 65.0
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.6e-87 325.1 239 67.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 7.8e-87 324.3 230 65.7
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 7.8e-87 324.3 235 66.8
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.3e-86 323.6 211 75.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.3e-86 322.8 233 68.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 8.7e-86 320.9 339 51.6
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.5e-85 319.3 239 65.7
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.3e-85 318.9 232 66.8
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.1e-84 314.3 289 57.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.8e-83 313.2 285 57.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.3e-83 311.6 236 65.3
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 6.9e-83 311.2 213 72.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 9.0e-83 310.8 230 65.7
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.2e-82 310.5 202 75.2
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.2e-82 310.5 202 74.8
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.2e-81 306.2 213 70.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.8e-81 305.4 196 74.5
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 6.6e-78 294.7 197 70.1
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 9.6e-77 290.8 240 61.2
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 9.6e-77 290.8 201 70.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.1e-75 287.3 233 64.4
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.9e-72 276.6 167 79.6
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.8e-68 261.9 232 57.3
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 5.3e-67 258.5 226 54.4
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.6e-66 256.1 153 81.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 6.0e-63 245.0 169 68.6
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 7.9e-63 244.6 166 70.5
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.3e-62 243.8 222 52.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 3.7e-52 209.1 145 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.3e-49 200.7 187 52.4
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.1e-47 191.8 139 64.7
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.1e-47 191.8 139 64.7
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 6.7e-46 188.3 128 69.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.0e-45 186.8 131 68.7
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.3e-45 185.7 125 71.2
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.3e-44 184.1 227 41.4
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 2.2e-44 183.3 119 75.6
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-44 183.0 119 75.6
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 2.8e-44 183.0 119 74.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.4e-43 180.6 182 53.3
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.0e-41 174.5 125 64.8
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 5.5e-40 168.7 166 53.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 9.4e-40 167.9 231 42.0
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 4.7e-39 165.6 118 67.8
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.2e-33 146.7 126 61.9
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 2.7e-31 139.8 119 59.7
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.0e-30 137.9 120 58.3
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.3e-28 131.0 208 40.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.2e-28 130.2 99 63.6
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.9e-26 122.1 111 57.7
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 5.9e-26 122.1 85 64.7
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.2e-24 116.3 147 40.8
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.4e-22 110.9 91 56.0
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 4.4e-21 105.9 235 32.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 7.5e-21 105.1 81 63.0
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 9.8e-21 104.8 100 59.0
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.8e-20 103.2 70 71.4
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.4e-19 100.9 86 55.8
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.7e-18 96.7 106 48.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 5.5e-16 89.0 183 29.0
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-14 84.7 74 60.8
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.8e-11 73.9 51 64.7
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.1e-11 72.8 162 32.7
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.9e-10 68.9 45 66.7
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 5.2e-06 55.8 39 64.1
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 8.9e-06 55.1 30 80.0


User provided reference genes

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