Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1620.9 798 100.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1595.1 798 97.7
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1508.0 797 91.7
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1505.3 798 92.0
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1502.3 797 90.7
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1501.1 797 90.7
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1498.8 797 90.8
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1496.9 797 90.6
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1492.2 797 90.3
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1490.3 797 90.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1488.4 797 90.6
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1487.6 797 90.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1484.9 797 90.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1483.0 797 90.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1483.0 797 90.1
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1480.3 797 90.1
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1466.8 799 89.5
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1453.3 756 95.0
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1401.3 853 81.4
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1364.4 810 81.2
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1310.0 807 78.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1309.3 805 78.3
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1306.6 807 78.4
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1304.7 807 78.6
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1302.7 807 78.4
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 805 77.5
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1300.4 805 78.9
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1297.0 804 78.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1297.0 805 78.8
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1296.2 807 78.2
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1295.8 811 77.4
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 806 77.2
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 806 77.7
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1292.7 816 76.8
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 806 76.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 807 77.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1283.9 805 77.0
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 807 76.3
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 804 78.1
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 808 75.9
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 809 76.6
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 805 77.3
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 805 77.0
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1276.2 805 76.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 806 76.1
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 806 76.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 805 77.1
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 805 76.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1268.8 804 76.9
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 799 76.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 805 76.0
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1266.1 810 75.8
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1266.1 807 75.3
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1265.8 810 75.6
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 804 75.4
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 806 75.7
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 810 75.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 804 76.5
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 806 75.4
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 804 76.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 808 76.4
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 806 75.2
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 803 76.6
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 807 75.1
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 810 75.4
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 810 74.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 805 75.5
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1242.3 798 74.7
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1238.4 805 75.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 804 75.5
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 811 74.4
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 803 73.5
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.4 794 74.8
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1228.0 799 75.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1219.9 883 68.2
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 810 73.3
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 829 72.6
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1211.1 806 72.7
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1208.4 806 73.1
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 809 72.4
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 803 73.0
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1202.6 800 72.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1199.5 803 72.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 806 72.5
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1196.0 803 72.1
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 803 71.7
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1188.3 801 71.7
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 804 71.6
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1176.0 803 70.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1172.9 805 73.3
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1171.0 803 71.9
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1169.8 808 70.4
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1168.3 867 67.2
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1167.1 804 70.0
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1165.2 785 72.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1164.1 858 66.9
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1162.1 801 70.4
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1159.8 803 69.5
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1159.4 804 68.9
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1151.3 807 69.6
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1146.7 799 70.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 819 68.6
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1129.4 910 63.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1122.1 810 69.0
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1114.4 776 71.0
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1101.7 963 59.9
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1098.6 961 59.9
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 801 66.9
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1082.4 813 66.2
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.1e-311 1073.2 821 64.7
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.9e-299 1032.3 804 64.9
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.1e-291 1006.5 795 62.3
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 4.9e-287 991.1 811 63.1
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 5.3e-273 944.5 803 60.4
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.9e-271 938.7 606 74.9
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.3e-233 811.6 775 56.6
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 7.0e-193 678.3 854 45.0
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.2e-181 641.0 381 79.8
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.5e-163 580.9 830 40.5
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.4e-153 547.7 801 41.9
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 6.2e-149 532.3 941 34.4
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.1e-145 521.5 842 38.1
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 9.4e-121 438.7 419 55.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.6e-112 410.2 316 63.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.7e-104 384.0 244 72.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 7.7e-99 365.9 345 59.4
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.9e-90 337.0 236 72.5
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.2e-70 272.3 195 67.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.0e-66 257.7 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 8.4e-53 213.0 665 28.3
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.1e-48 198.4 141 73.0
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 3.1e-47 194.5 185 60.5
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.2e-38 166.0 90 82.2
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.2e-35 156.0 267 39.3
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.9e-34 151.0 133 53.4
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.8e-32 144.8 104 63.5
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 6.2e-32 143.7 99 64.6
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.9e-29 134.8 190 43.7
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.9e-29 134.8 100 69.0
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.5e-28 131.7 120 59.2
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.5e-28 131.7 80 80.0
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 3.2e-28 131.3 175 44.0
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 6.1e-27 127.1 113 49.6
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 6.1e-27 127.1 118 56.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 4.1e-23 114.4 114 54.4
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 5.3e-23 114.0 257 30.7
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 3.4e-22 111.3 168 41.1
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.7e-19 101.7 69 69.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.3e-18 98.6 50 86.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.8e-15 89.0 73 64.4
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.1e-15 88.2 43 88.4
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.6e-14 85.1 72 59.7
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.3e-13 82.8 143 43.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.9e-12 79.0 60 53.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.1e-11 75.5 129 38.0
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 1.0e-10 73.2 69 55.1
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 9.7e-09 66.6 57 59.6
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 5.3e-07 60.8 287 22.3
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 2.0e-06 58.9 69 55.1
BolC4t27959H Brassica oleracea HOM05D001091 ORTHO05D001020 2.6e-06 58.5 339 22.4


User provided reference genes

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