Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.9e-226 788.5 471 100.0
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.5e-182 642.5 477 78.0
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.3e-167 592.8 474 78.7
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.3e-162 577.0 474 72.2
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.3e-154 550.4 460 69.8
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 5.0e-154 548.5 475 68.6
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.2e-128 464.2 485 61.0
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.2e-107 394.4 480 55.4
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.3e-106 391.0 479 54.3
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 7.5e-102 375.2 483 53.2
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 7.0e-100 368.6 471 51.6
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.7e-99 366.7 480 52.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.0e-98 363.2 474 53.4
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.5e-97 360.1 481 52.8
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.6e-96 357.5 482 50.0
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-96 357.5 482 50.0
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.6e-96 357.5 482 50.0
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.6e-94 350.1 479 53.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 3.4e-94 349.7 476 56.1
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.4e-94 349.7 476 51.3
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 4.4e-94 349.4 478 51.7
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 5.8e-94 349.0 476 51.3
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.7e-93 347.4 477 53.5
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.9e-93 345.9 484 50.2
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-92 344.7 480 51.7
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.1e-92 344.7 480 51.7
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 3.5e-91 339.7 484 49.4
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.9e-89 334.0 485 51.1
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 9.5e-89 331.6 501 47.9
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 9.5e-89 331.6 502 45.2
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.2e-88 331.3 469 47.8
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.6e-88 330.9 472 47.7
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.1e-88 330.5 470 46.6
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.1e-88 330.5 486 46.5
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.1e-88 330.5 484 50.8
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 2.8e-88 330.1 479 52.4
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.8e-87 325.5 486 49.6
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.4e-86 322.8 486 45.3
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 5.8e-86 322.4 473 46.3
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 7.6e-86 322.0 496 49.6
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 9.9e-86 321.6 494 45.7
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.8e-85 319.7 495 46.7
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.1e-84 318.2 486 48.8
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.1e-84 318.2 486 48.8
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 1.9e-84 317.4 507 44.6
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.2e-84 316.2 483 52.8
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 5.4e-84 315.8 472 46.2
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.2e-83 314.7 487 48.3
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.2e-83 314.7 495 45.3
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.1e-83 313.9 484 46.5
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 2.1e-83 313.9 487 48.5
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.5e-83 313.2 477 52.2
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 3.5e-83 313.2 502 51.4
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.0e-83 312.4 482 53.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.7e-82 310.8 478 46.4
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.7e-82 310.8 489 45.2
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.0e-82 310.1 493 49.3
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 3.9e-82 309.7 509 47.7
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.9e-82 309.7 477 44.4
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 5.1e-82 309.3 481 46.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 8.7e-82 308.5 486 45.3
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.1e-81 308.1 485 42.9
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.5e-81 307.8 476 47.1
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.5e-81 307.8 475 48.4
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.5e-81 307.0 478 46.4
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 3.3e-81 306.6 470 46.6
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.3e-81 306.2 486 44.4
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 5.6e-81 305.8 478 48.3
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 7.3e-81 305.4 483 48.9
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 9.6e-81 305.1 474 51.1
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.6e-81 305.1 486 48.4
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.8e-80 303.5 487 45.0
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 3.6e-80 303.1 492 44.5
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 6.2e-80 302.4 470 48.5
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 6.2e-80 302.4 470 48.5
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 8.1e-80 302.0 484 45.0
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 8.1e-80 302.0 537 46.9
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.8e-79 300.8 470 48.3
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.8e-79 300.8 470 46.8
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 6.9e-79 298.9 491 44.8
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 9.0e-79 298.5 481 43.9
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.2e-78 298.1 483 47.2
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.5e-78 297.7 470 44.5
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 5.8e-78 295.8 473 51.4
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 9.9e-78 295.0 474 49.6
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 9.9e-78 295.0 509 48.9
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 9.9e-78 295.0 478 44.6
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.3e-77 294.7 476 50.4
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.7e-77 294.3 479 47.0
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 2.9e-77 293.5 475 42.7
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.9e-77 293.5 483 46.4
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 3.8e-77 293.1 501 43.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 4.9e-77 292.7 482 43.2
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 6.4e-77 292.4 509 47.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.1e-76 291.6 481 47.2
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 2.4e-76 290.4 479 49.3
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.2e-76 290.0 477 47.2
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.2e-76 290.0 446 46.0
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 9.3e-76 288.5 487 43.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.1e-75 287.3 478 47.5
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 2.7e-75 287.0 510 41.8
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 6.0e-75 285.8 483 43.3
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 6.0e-75 285.8 499 44.9
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 7.8e-75 285.4 510 43.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.0e-74 285.0 484 50.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.0e-74 285.0 489 42.9
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.3e-74 284.6 474 47.3
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.3e-74 283.9 501 40.7
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.0e-74 283.5 475 42.1
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.1e-73 281.6 490 48.0
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.5e-73 281.2 490 44.7
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 7.3e-73 278.9 478 44.8
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.6e-72 277.7 488 42.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.6e-72 277.7 494 41.7
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.8e-72 276.9 484 46.5
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.6e-72 276.6 477 47.0
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 6.2e-72 275.8 472 40.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 8.1e-72 275.4 475 44.4
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.1e-71 275.0 473 44.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.4e-71 274.6 491 43.4
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.4e-71 274.6 475 46.1
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 3.1e-71 273.5 492 43.3
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 5.3e-71 272.7 472 50.8
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.6e-70 270.4 486 42.2
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 2.9e-69 266.9 477 42.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 8.4e-69 265.4 478 47.7
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.2e-67 261.5 414 44.4
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.6e-67 261.2 474 48.5
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.1e-67 260.8 489 49.3
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.6e-67 259.6 454 44.9
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.0e-66 258.5 240 62.9
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.0e-66 258.5 469 40.9
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 3.9e-66 256.5 475 47.4
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 8.7e-66 255.4 485 43.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.5e-65 253.8 470 47.0
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 3.7e-64 250.0 485 42.1
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.1e-63 248.4 476 44.5
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.2e-62 245.0 503 38.8
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.5e-62 244.6 480 45.0
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 7.6e-62 242.3 239 59.0
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.5e-59 233.4 479 46.1
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 6.7e-58 229.2 479 39.5
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.5e-57 228.0 466 43.6
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.6e-56 224.6 481 39.1
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-49 201.8 157 68.2
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.3e-48 198.4 524 34.2
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.8e-48 196.4 511 34.1
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 9.0e-47 192.2 472 40.9
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 2.0e-46 191.0 502 35.1
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 9.7e-41 172.2 475 38.5
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.8e-40 170.6 374 39.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.0e-37 159.8 482 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.1e-35 154.5 489 35.4
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 3.9e-34 150.2 384 38.0
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 9.7e-33 145.6 389 33.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-30 138.3 104 71.2
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 7.7e-30 136.0 500 34.6
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.1e-28 132.1 86 73.3
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.9e-28 131.3 178 47.2
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-25 121.3 458 31.9
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 2.8e-24 117.5 93 71.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 5.9e-22 109.8 115 60.0
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-17 94.7 118 55.9
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.6e-17 94.4 132 45.5
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.6e-17 94.4 139 43.2
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 5.7e-17 93.2 133 48.1
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.1e-15 89.0 170 45.3
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 7.0e-15 86.3 503 24.5
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 2.7e-14 84.3 110 49.1
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 8.5e-13 79.3 108 50.9
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 5.5e-12 76.6 126 41.3
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 4.7e-11 73.6 72 52.8
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 5.7e-09 66.6 238 27.3
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 5.7e-09 66.6 129 40.3
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.7e-08 65.1 147 32.7
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 4.1e-07 60.5 145 33.8
BraA08t32263Z Brassica rapa HOM05D003909 ORTHO05D004478 1.2e-06 58.9 60 63.3
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 5.9e-06 56.6 63 52.4


User provided reference genes

Program Settings