Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.7e-72 275.8 202 100.0
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.6e-67 259.2 203 86.2
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 2.2e-58 229.6 206 80.6
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.1e-57 227.3 197 72.1
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 7.8e-56 221.1 157 84.7
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 8.6e-55 217.6 155 83.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 8.6e-55 217.6 155 83.2
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-54 216.1 156 86.5
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 7.3e-54 214.5 155 81.9
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 9.5e-54 214.2 151 84.1
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 9.5e-54 214.2 156 87.2
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.6e-53 213.4 156 84.0
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-53 212.6 155 83.2
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.6e-53 212.2 156 76.3
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.7e-53 211.8 161 88.2
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 8.1e-53 211.1 156 81.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 8.1e-53 211.1 156 81.4
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-52 210.3 156 85.3
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.3e-52 209.5 156 84.0
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.1e-52 209.1 176 86.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 6.8e-52 208.0 156 84.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.2e-51 207.2 157 77.7
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-51 207.2 156 84.6
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-51 207.2 156 78.8
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-51 207.2 156 84.6
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.2e-51 207.2 156 84.6
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-51 206.8 156 80.1
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.5e-51 206.8 156 85.9
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.8e-51 204.9 177 84.7
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 7.6e-51 204.5 159 83.0
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 9.9e-51 204.1 178 83.1
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.7e-50 203.4 157 82.8
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.2e-50 203.0 156 78.2
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 2.9e-50 202.6 156 78.2
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.9e-50 202.6 176 76.1
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 3.7e-50 202.2 206 68.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 3.7e-50 202.2 206 68.9
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.7e-50 202.2 158 78.5
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 4.9e-50 201.8 157 77.7
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 8.3e-50 201.1 157 82.8
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 8.3e-50 201.1 108 88.0
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.1e-49 200.7 154 81.2
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 158 75.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.4e-49 200.3 207 70.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.9e-49 199.9 176 83.0
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.9e-49 199.9 157 81.5
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.9e-49 199.9 158 81.0
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.9e-49 199.9 157 84.1
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.4e-49 199.5 158 77.2
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.4e-49 199.5 207 65.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.4e-49 199.5 158 75.3
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.4e-49 199.5 158 75.3
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 4.1e-49 198.7 199 79.9
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.1e-49 198.7 207 77.3
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 4.1e-49 198.7 109 85.3
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 5.4e-49 198.4 109 86.2
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 5.4e-49 198.4 166 71.1
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 5.4e-49 198.4 158 69.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 5.4e-49 198.4 154 79.2
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 5.4e-49 198.4 153 83.7
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 5.4e-49 198.4 161 72.0
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 7.1e-49 198.0 109 84.4
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 7.1e-49 198.0 158 82.9
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 9.2e-49 197.6 157 79.6
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.1e-48 196.4 176 83.5
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.1e-48 196.4 107 85.0
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 2.1e-48 196.4 202 77.7
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 3.5e-48 195.7 107 86.0
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 3.5e-48 195.7 107 86.0
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.6e-48 195.3 156 78.2
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.6e-48 195.3 151 82.1
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.6e-48 195.3 151 82.1
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.6e-48 195.3 180 73.9
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 4.6e-48 195.3 156 83.3
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 4.6e-48 195.3 200 68.0
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 4.6e-48 195.3 158 77.8
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 6.0e-48 194.9 162 76.5
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 6.0e-48 194.9 157 74.5
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 6.0e-48 194.9 149 78.5
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.8e-48 194.5 158 70.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 7.8e-48 194.5 157 80.3
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.0e-47 194.1 160 78.8
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.0e-47 194.1 160 78.8
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.0e-47 194.1 162 77.2
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.0e-47 194.1 162 77.2
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.0e-47 194.1 176 79.0
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.0e-47 194.1 155 81.3
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.3e-47 193.7 205 71.2
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.7e-47 193.4 205 77.1
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.7e-47 193.4 128 82.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.7e-47 193.4 151 81.5
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.7e-47 193.4 149 83.9
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.3e-47 193.0 162 77.2
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.3e-47 193.0 181 72.9
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.3e-47 193.0 162 76.5
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.0e-47 192.6 148 85.8
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 3.9e-47 192.2 175 75.4
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.9e-47 192.2 151 82.1
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.9e-47 192.2 157 68.8
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 6.6e-47 191.4 200 71.0
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.6e-47 191.4 157 80.9
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 6.6e-47 191.4 103 84.5
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.6e-47 191.0 151 81.5
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 8.6e-47 191.0 151 81.5
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 8.6e-47 191.0 164 79.9
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.1e-46 190.7 180 71.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 187 66.8
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.5e-46 190.3 149 83.2
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.5e-46 190.3 157 77.7
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.5e-46 190.3 152 77.6
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.5e-46 190.3 151 82.1
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.9e-46 189.9 156 77.6
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.5e-46 189.5 153 76.5
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.5e-46 189.5 157 82.8
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 3.3e-46 189.1 185 77.3
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 7.3e-46 188.0 159 78.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 9.6e-46 187.6 156 80.1
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-45 187.2 155 81.3
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.6e-45 186.8 148 83.1
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.6e-45 186.8 176 80.7
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.8e-45 186.0 205 73.7
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.8e-45 186.0 157 73.2
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.8e-45 186.0 158 76.6
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.8e-45 186.0 157 74.5
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.6e-45 185.7 158 75.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 8.1e-45 184.5 156 80.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.4e-44 183.0 191 66.5
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 4.0e-44 182.2 157 77.7
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 5.2e-44 181.8 126 79.4
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 6.8e-44 181.4 147 83.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 7.6e-43 177.9 155 71.6
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.7e-42 176.8 157 73.2
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.7e-42 176.8 108 75.9
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 2.2e-42 176.4 151 80.8
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 2.2e-42 176.4 151 80.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.8e-42 175.6 157 69.4
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.9e-42 175.3 152 73.7
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 8.4e-42 174.5 148 75.0
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.9e-41 173.3 159 73.6
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 4.2e-41 172.2 159 73.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.2e-40 170.6 91 87.9
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.2e-40 170.6 158 69.0
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.7e-40 169.5 93 84.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.5e-40 169.1 149 74.5
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.6e-39 164.9 89 86.5
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 7.3e-38 161.4 90 84.4
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.8e-37 159.5 97 75.3
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.6e-37 159.1 158 66.5
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 4.4e-35 152.1 110 67.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 5.8e-35 151.8 81 85.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.4e-33 146.4 107 64.5
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 6.0e-32 141.7 127 61.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 8.7e-31 137.9 77 81.8
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 2.2e-26 123.2 100 65.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.4e-26 121.7 76 69.7
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 3.2e-25 119.4 64 87.5
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 6.7e-23 111.7 114 50.9
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 8.7e-23 111.3 93 61.3
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.3e-21 107.5 58 87.9
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 9.3e-17 91.3 50 78.0
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-16 90.9 152 46.1
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.0e-15 86.3 59 67.8
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-14 84.3 59 66.1
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.1e-13 80.1 46 82.6
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 4.5e-11 72.4 156 48.7
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.0e-10 71.2 46 73.9
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-10 70.5 46 73.9
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-10 70.5 46 73.9
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-10 70.5 46 73.9
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.9e-10 69.7 46 73.9
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.9e-10 69.7 46 73.9
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 6.7e-07 58.5 38 68.4


User provided reference genes

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