Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 9.3e-176 620.2 325 100.0
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.8e-166 589.3 331 94.6
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 1.2e-154 550.1 327 89.0
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 2.5e-152 542.3 331 86.4
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 1.0e-150 537.0 325 86.5
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 1.8e-150 536.2 325 86.2
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 6.7e-150 534.3 328 88.4
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.5e-149 533.1 325 85.8
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 3.3e-149 531.9 331 85.2
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 5.7e-149 531.2 325 85.5
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 7.4e-149 530.8 325 85.8
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 3.7e-148 528.5 331 85.5
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 8.2e-148 527.3 330 85.5
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 5.5e-144 514.6 288 93.8
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 8.2e-132 474.2 339 75.5
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 6.7e-126 454.5 299 80.9
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 9.8e-117 424.1 332 69.6
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 7.0e-115 417.9 350 66.6
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 2.5e-112 409.5 326 67.2
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.2e-112 409.1 359 63.5
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 4.2e-112 408.7 331 67.7
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 5.5e-112 408.3 323 67.8
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 9.4e-112 407.5 331 68.0
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.1e-111 406.4 327 66.7
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 4.7e-111 405.2 358 62.0
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.7e-111 405.2 338 66.3
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.0e-110 404.1 338 65.7
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.8e-110 403.3 318 65.7
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 2.0e-109 399.8 356 63.8
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 7.5e-109 397.9 326 66.0
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 9.8e-109 397.5 322 67.4
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 2.2e-108 396.4 362 61.3
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 2.8e-108 396.0 322 67.1
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 3.7e-108 395.6 352 61.9
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 6.3e-108 394.8 313 67.4
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.1e-107 394.0 322 67.1
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.8e-107 393.3 326 64.7
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 3.5e-106 389.0 319 64.6
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 3.5e-106 389.0 359 61.0
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 5.9e-106 388.3 319 65.8
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 7.7e-106 387.9 319 64.6
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 2.3e-105 386.3 334 61.7
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 5.0e-105 385.2 326 63.8
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 8.6e-105 384.4 328 63.4
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.1e-104 384.0 316 65.2
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.5e-104 383.6 330 63.0
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.5e-104 383.6 326 62.6
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 1.9e-104 383.3 344 62.5
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 3.3e-104 382.5 328 63.1
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 7.3e-104 381.3 323 62.2
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 7.3e-104 381.3 323 62.2
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 7.3e-104 381.3 313 65.2
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.0e-102 375.6 325 64.0
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 4.0e-102 375.6 351 61.0
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 5.2e-102 375.2 351 61.3
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 5.2e-102 375.2 336 61.3
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.4e-101 372.5 325 60.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 4.4e-101 372.1 331 61.3
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 5.7e-101 371.7 308 64.3
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 9.8e-101 370.9 313 63.3
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.4e-99 367.1 387 54.3
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.2e-98 364.0 351 57.8
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 2.7e-98 362.8 325 63.4
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 2.7e-98 362.8 329 62.6
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 4.6e-98 362.1 318 61.9
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 5.9e-98 361.7 350 58.9
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.0e-97 360.9 320 61.2
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.0e-97 360.9 327 60.6
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 3.9e-97 359.0 345 60.9
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 1.1e-96 357.5 335 57.6
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.9e-96 356.7 434 50.9
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 7.3e-96 354.8 346 59.2
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.2e-95 354.0 319 61.8
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.6e-95 353.6 432 50.7
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 1.6e-95 353.6 345 60.0
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 2.1e-95 353.2 346 59.0
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 2.8e-95 352.8 450 48.9
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 3.6e-95 352.4 323 58.8
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 8.0e-95 351.3 325 60.0
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 8.0e-95 351.3 325 59.7
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 1.4e-94 350.5 322 60.2
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 2.0e-93 346.7 328 58.2
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 4.4e-93 345.5 281 66.2
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 9.8e-93 344.4 349 58.5
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 2.4e-91 339.7 329 57.1
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 3.0e-89 332.8 347 58.2
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 8.3e-84 314.7 295 57.6
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 5.1e-81 305.4 294 57.8
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 2.5e-80 303.1 328 53.4
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 2.6e-77 293.1 310 56.5
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 3.4e-77 292.7 330 55.8
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 3.4e-77 292.7 309 53.4
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 9.9e-77 291.2 244 64.3
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 2.9e-76 289.7 324 51.2
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 8.4e-76 288.1 329 50.8
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 3.2e-75 286.2 292 56.2
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 1.0e-73 281.2 346 49.4
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 1.0e-73 281.2 325 50.2
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 1.7e-73 280.4 339 51.0
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 4.7e-71 272.3 295 55.3
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 8.1e-71 271.6 322 52.5
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 2.4e-70 270.0 297 54.2
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 4.0e-70 269.2 346 50.9
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 6.9e-62 241.9 309 46.3
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 4.5e-61 239.2 299 48.2
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 5.1e-57 225.7 190 63.2
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.1e-54 218.0 340 40.9
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.5e-53 214.2 266 49.6
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.0e-53 213.8 298 44.0
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.0e-49 201.4 291 47.1
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.1e-48 198.0 290 42.8
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 5.8e-45 185.7 288 42.7
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 3.2e-35 153.3 187 53.5
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.5e-32 144.4 136 58.1
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 2.4e-30 137.1 328 35.7
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 5.5e-27 125.9 103 64.1
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 3.2e-19 100.1 100 57.0
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 3.1e-14 83.6 88 56.8
CARHR177930 Cardamine hirsuta HOM05D005526 ORTHO05D006802 1.2e-13 81.6 48 87.5
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.7e-10 70.5 76 46.1
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 4.0e-09 66.6 105 44.8


User provided reference genes

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