Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1224.9 636 100.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 631 91.8
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 631 91.9
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 631 91.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 631 91.9
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1103.2 631 91.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 631 90.5
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 631 91.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 631 91.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 631 91.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 631 91.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 632 91.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 3.0e-303 1044.6 673 83.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.1e-301 1038.5 621 86.0
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.8e-295 1018.8 614 84.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.1e-295 1017.3 665 81.5
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 8.7e-295 1016.5 624 84.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.8e-293 1011.5 622 84.6
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 3.7e-293 1011.1 613 83.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 1.1e-292 1009.6 620 82.1
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.0e-291 1005.4 620 82.3
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.7e-290 1002.3 614 83.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 1.7e-290 1002.3 623 82.3
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 2.2e-290 1001.9 621 81.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 3.8e-290 1001.1 620 81.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 4.9e-290 1000.7 618 81.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 6.5e-290 1000.3 611 82.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.1e-289 999.6 613 82.5
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 9.3e-289 996.5 610 83.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 2.1e-288 995.3 610 83.1
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 2.1e-288 995.3 610 83.1
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 2.1e-288 995.3 610 83.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 2.1e-288 995.3 631 80.7
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 2.1e-288 995.3 614 82.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.7e-288 995.0 626 81.3
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.5e-288 994.6 613 82.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 3.5e-288 994.6 613 82.2
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 3.5e-288 994.6 613 82.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 4.6e-288 994.2 626 80.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 7.9e-288 993.4 613 82.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 1.8e-287 992.3 631 80.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 1.8e-287 992.3 614 81.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 3.0e-287 991.5 611 83.1
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 5.1e-287 990.7 614 82.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 5.1e-287 990.7 614 82.1
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 6.7e-287 990.3 617 81.5
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 5.7e-286 987.3 614 81.6
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 7.4e-286 986.9 620 81.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 2.8e-285 984.9 615 81.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 8.2e-285 983.4 614 81.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.1e-284 981.5 624 80.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 1.2e-283 979.5 614 80.5
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 5.8e-283 977.2 657 76.6
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 7.6e-283 976.9 629 78.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.2e-282 975.3 618 79.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 8.4e-282 973.4 613 81.2
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.4e-281 972.6 611 81.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.9e-281 972.2 614 81.3
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.2e-281 971.5 618 79.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.1e-281 970.3 613 80.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.2e-280 969.5 615 80.0
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.0e-279 966.5 611 80.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.3e-279 966.1 611 80.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.3e-279 965.3 590 81.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 3.9e-279 964.5 622 78.8
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 5.1e-279 964.1 624 79.5
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 6.7e-279 963.8 654 76.8
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 8.7e-279 963.4 623 78.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.5e-278 962.6 613 80.4
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.9e-278 962.2 623 78.2
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 2.5e-278 961.8 613 79.4
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.7e-278 960.7 637 77.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.7e-278 959.9 625 79.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.3e-277 959.5 611 79.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 3.7e-277 958.0 610 80.0
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 2.4e-276 955.3 612 79.9
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 4.1e-276 954.5 611 80.5
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.6e-275 951.8 637 76.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 3.4e-275 951.4 631 77.5
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 4.5e-275 951.0 613 79.8
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 4.5e-275 951.0 610 78.2
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 7.7e-275 950.3 614 78.8
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.0e-274 949.9 624 78.7
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 7.2e-273 943.7 613 77.8
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 2.1e-272 942.2 620 78.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.1e-272 942.2 619 77.2
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 7.9e-272 940.3 609 78.2
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.4e-271 939.5 610 78.7
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 1.8e-271 939.1 590 79.3
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.1e-270 936.4 620 77.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.3e-269 932.9 638 76.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 5.9e-267 924.1 618 77.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 5.9e-267 924.1 655 72.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.0e-266 923.3 616 75.5
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 3.6e-264 914.8 693 69.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-263 912.9 630 75.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.3e-263 912.1 618 74.6
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.1e-257 893.3 590 78.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.1e-256 889.0 655 71.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.9e-251 870.9 637 70.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.1e-241 840.1 511 82.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.6e-235 819.7 515 79.8
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.3e-234 815.8 612 66.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.3e-234 815.8 612 66.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.9e-231 803.9 555 75.3
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 5.7e-230 801.2 605 65.8
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-224 783.1 508 76.2
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.6e-224 781.9 614 64.7
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-223 780.0 485 81.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.1e-223 778.9 615 63.9
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.6e-214 749.2 608 66.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.6e-211 740.0 490 74.9
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.0e-210 737.3 478 78.2
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 7.3e-209 731.1 599 66.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 4.0e-207 725.3 513 72.5
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 8.7e-194 681.0 604 57.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-184 649.0 451 76.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 7.1e-180 634.8 598 53.7
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.4e-161 571.6 365 75.3
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.8e-152 542.3 328 79.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.7e-134 481.9 656 42.1
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 8.0e-123 445.3 574 41.5
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.6e-115 419.9 373 59.0
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-101 374.4 261 75.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.9e-96 356.3 642 35.4
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.5e-92 344.0 209 79.9
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.5e-92 342.0 245 74.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.4e-89 333.2 204 80.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.2e-83 315.1 194 77.8
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 3.1e-82 310.5 193 79.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.9e-77 293.5 183 75.4
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 5.8e-73 279.6 193 76.7
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.7e-69 265.8 148 83.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.6e-67 261.5 177 71.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 6.2e-67 259.6 190 71.1
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-66 258.8 161 78.9
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.3e-66 256.5 195 67.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.4e-58 231.9 192 67.7
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-58 231.5 155 65.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 8.7e-53 212.6 156 67.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.4e-50 205.3 214 56.5
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.8e-50 204.9 180 65.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 9.0e-50 202.6 489 28.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.5e-44 184.5 119 79.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 8.2e-43 179.5 114 79.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.6e-36 157.9 107 77.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.7e-36 156.8 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-31 142.1 96 76.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.9e-31 141.7 139 61.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.6e-30 137.5 126 65.1
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-29 135.6 96 72.9
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-29 135.6 96 72.9
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.6e-22 112.1 90 64.4
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.2e-20 105.9 63 79.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 5.7e-20 103.6 69 69.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.3e-19 102.4 74 73.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.7e-19 102.1 59 83.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.8e-19 101.3 77 68.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.8e-19 100.5 57 84.2
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.9e-17 93.6 94 56.4
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.0e-16 92.8 73 68.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.5e-16 89.7 103 49.5
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.4e-13 82.4 65 64.6
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.8e-11 73.9 78 48.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.1e-10 71.2 60 61.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 4.2e-07 60.8 40 77.5


User provided reference genes

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