Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL243U10010 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 3.0e-63 245.0 122 100.0
Carub.0008s1108 Capsella rubella HOM05D001690 ORTHO05D002627 1.9e-44 182.6 116 78.4
Sp1g21400 Schrenkiella parvula HOM05D001690 ORTHO05D002627 4.3e-41 171.4 114 74.6
Carub.0001s2352 Capsella rubella HOM05D001690 ORTHO05D002627 3.6e-40 168.3 115 73.9
AL8G25330 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 8.1e-40 167.2 85 100.0
Sp1g21405 Schrenkiella parvula HOM05D001690 ORTHO05D002627 6.8e-39 164.1 106 77.4
AL1G37890 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 7.6e-38 160.6 118 74.6
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 2.2e-37 159.1 115 72.2
Thhalv10008082m.g Eutrema salsugineum HOM05D001690 ORTHO05D002627 4.9e-37 157.9 115 73.0
AT1G24090 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 8.3e-37 157.1 117 71.8
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.1e-36 154.8 115 74.8
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 4.1e-36 154.8 115 74.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 2.1e-35 152.5 116 71.6
Aa31LG7G7860 Aethionema arabicum HOM05D001690 ORTHO05D002627 1.1e-33 146.7 121 65.3
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 2.5e-33 145.6 118 67.8
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 2.5e-33 145.6 118 67.8
THA.LOC104824673 Tarenaya hassleriana HOM05D001690 ORTHO05D002627 2.8e-24 115.5 121 55.4
AT5G51080 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 3.0e-18 95.5 50 92.0
Cpa.g.sc5.352 Carica papaya HOM05D001690 ORTHO05D002627 8.1e-16 87.4 123 44.7
Ah.02g131560 Amaranthus hybridus HOM05D001690 ORTHO05D002627 4.0e-15 85.1 98 48.0
QL03p062472 Quercus lobata HOM05D001690 ORTHO05D002627 1.3e-13 80.1 68 61.8
GSVIVG01020170001 Vitis vinifera HOM05D001690 ORTHO05D002627 1.7e-13 79.7 128 42.2
MD16G1087400 Malus domestica HOM05D001690 ORTHO05D002627 2.2e-13 79.3 108 41.7
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 3.8e-13 78.6 68 66.2
Lj4g0014493 Lotus japonicus HOM05D001690 ORTHO05D002627 3.8e-13 78.6 120 43.3
Sc11g0001360 Simmondsia chinensis HOM05D001690 ORTHO05D002627 3.8e-13 78.6 113 45.1
CARHR024370 Cardamine hirsuta HOM05D001690 ORTHO05D002627 4.9e-13 78.2 47 80.9
Cc11_g13600 Coffea canephora HOM05D001690 ORTHO05D002627 6.4e-13 77.8 109 44.0
EL10Ac6g13730 Beta vulgaris HOM05D001690 ORTHO05D002627 8.4e-13 77.4 120 42.5
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 1.1e-12 77.0 71 50.7
Rhsim12G0048800 Rhododendron simsii HOM05D001690 ORTHO05D002627 1.1e-12 77.0 65 61.5
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 1.4e-12 76.6 66 57.6
Eucgr.B02559 Eucalyptus grandis HOM05D001690 ORTHO05D002627 1.4e-12 76.6 67 59.7
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 1.9e-12 76.3 125 38.4
Actinidia08180 Actinidia chinensis HOM05D001690 ORTHO05D002627 2.4e-12 75.9 67 56.7
Ca_22778_v3 Cicer arietinum L. HOM05D001690 ORTHO05D002627 3.2e-12 75.5 124 38.7
Lsat_1_v5_gn_8_160200 Lactuca sativa HOM05D001690 ORTHO05D002627 3.2e-12 75.5 68 57.4
Psat4g126200 Pisum sativum HOM05D001690 ORTHO05D002627 3.2e-12 75.5 79 51.9
FvH4_2g39271 Fragaria vesca HOM05D001690 ORTHO05D002627 4.2e-12 75.1 96 46.9
Lj1C962G6 Lonicera japonica HOM05D001690 ORTHO05D002627 4.2e-12 75.1 68 57.4
vmacro01196 Vaccinium macrocarpon HOM05D001690 ORTHO05D002627 4.2e-12 75.1 65 60.0
Hund05956 Selenicereus undatus HOM05D001690 ORTHO05D002627 5.4e-12 74.7 96 41.7
Lj7A409G61 Lonicera japonica HOM05D001690 ORTHO05D002627 7.1e-12 74.3 42 78.6
Prupe.1G259600 Prunus persica HOM05D001690 ORTHO05D002627 7.1e-12 74.3 132 37.9
Lalb_Chr05g0228001 Lupinus albus HOM05D001690 ORTHO05D002627 1.2e-11 73.6 71 57.7
Sabra10G0067400 Salix brachista HOM05D001690 ORTHO05D002627 1.2e-11 73.6 69 52.2
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 1.2e-11 73.6 68 55.9
Aqoxy3G03078 Aquilegia oxysepala HOM05D001690 ORTHO05D002627 1.6e-11 73.2 128 39.1
Gorai.009G350100 Gossypium raimondii HOM05D001690 ORTHO05D002627 1.6e-11 73.2 122 36.1
TWI18G1158 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 1.6e-11 73.2 68 58.8
Lsat_1_v5_gn_3_49101 Lactuca sativa HOM05D001690 ORTHO05D002627 2.7e-11 72.4 68 57.4
Lj3C1049G3 Lonicera japonica HOM05D001690 ORTHO05D009096 2.7e-11 72.4 66 53.0
Peaxi162Scf00421g00712 Petunia axillaris HOM05D001690 ORTHO05D002627 2.7e-11 72.4 78 47.4
Psat4g126440 Pisum sativum HOM05D001690 ORTHO05D002627 2.7e-11 72.4 77 53.2
TAR371G0464 Trochodendron aralioides HOM05D001690 ORTHO05D002627 3.5e-11 72.0 69 56.5
Atru.chr11.1965 Acer truncatum HOM05D001690 ORTHO05D002627 4.6e-11 71.6 67 53.7
Solyc05g006090.4 Solanum lycopersicum HOM05D001690 ORTHO05D002627 4.6e-11 71.6 68 51.5
ECA246G4654 Erigeron canadensis HOM05D001690 ORTHO05D002627 6.0e-11 71.2 69 55.1
Nitab4.5_0000257g0250 Nicotiana tabacum HOM05D001690 ORTHO05D002627 6.0e-11 71.2 111 41.4
Nitab4.5_0005722g0020 Nicotiana tabacum HOM05D001690 ORTHO05D002627 6.0e-11 71.2 67 53.7
TPR.G40109 Trifolium pratense HOM05D001690 ORTHO05D002627 6.0e-11 71.2 102 49.0
arahy.Tifrunner.gnm1.ann1.8SCN2T Arachis hypogaea HOM05D001690 ORTHO05D002627 7.9e-11 70.9 41 75.6
arahy.Tifrunner.gnm1.ann1.AP71DE Arachis hypogaea HOM05D001690 ORTHO05D002627 7.9e-11 70.9 41 75.6
CANSAT78G0546 Cannabis sativa HOM05D001690 ORTHO05D002627 7.9e-11 70.9 42 73.8
Oeu001658.1 Olea europaea HOM05D001690 ORTHO05D002627 7.9e-11 70.9 69 53.6
Solyc04g005010.4 Solanum lycopersicum HOM05D001690 ORTHO05D002627 7.9e-11 70.9 67 52.2
Sopen04g001020 Solanum pennellii HOM05D001690 ORTHO05D002627 7.9e-11 70.9 67 52.2
Duzib268G0426 Durio zibethinus HOM05D001690 ORTHO05D002627 1.0e-10 70.5 67 52.2
Sopen05g002110 Solanum pennellii HOM05D001690 ORTHO05D002627 1.0e-10 70.5 68 51.5
MSTRG.7875 Avicennia marina HOM05D001690 ORTHO05D002627 1.3e-10 70.1 64 51.6
Eucgr.I01834 Eucalyptus grandis HOM05D001690 ORTHO05D002627 1.3e-10 70.1 42 71.4
HanXRQChr12g0371331 Helianthus annuus HOM05D001690 ORTHO05D002627 1.3e-10 70.1 56 62.5
HanXRQChr15g0476641 Helianthus annuus HOM05D001690 ORTHO05D002627 1.3e-10 70.1 41 78.0
SGA_v2.0_scaffold8G04244 Striga asiatica HOM05D001690 ORTHO05D002627 1.3e-10 70.1 68 52.9
Nitab4.5_0000031g0340 Nicotiana tabacum HOM05D001690 ORTHO05D002627 1.8e-10 69.7 65 53.8
Nitab4.5_0006492g0030 Nicotiana tabacum HOM05D001690 ORTHO05D002627 1.8e-10 69.7 65 53.8
Sed0007819 Sechium edule HOM05D001690 ORTHO05D002627 1.8e-10 69.7 68 52.9
PGSC0003DMG400001921 Solanum tuberosum HOM05D001690 ORTHO05D002627 1.8e-10 69.7 67 52.2
AUR62026582 Chenopodium quinoa HOM05D001690 ORTHO05D002627 2.3e-10 69.3 135 38.5
DCAR_031083 Daucus carota HOM05D001690 ORTHO05D002627 2.3e-10 69.3 69 58.0
CSS0010802 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 3.0e-10 68.9 67 55.2
ClCG09G020670 Citrullus lanatus HOM05D001690 ORTHO05D002627 3.9e-10 68.6 67 52.2
Migut.L01443 Erythranthe guttata HOM05D001690 ORTHO05D002627 3.9e-10 68.6 89 42.7
Gorai.005G185700 Gossypium raimondii HOM05D001690 ORTHO05D002627 3.9e-10 68.6 72 50.0
PSO063G6989 Papaver somniferum HOM05D001690 ORTHO05D002627 3.9e-10 68.6 42 76.2
SGA_v2.0_scaffold87G27000 Striga asiatica HOM05D001690 ORTHO05D002627 3.9e-10 68.6 115 36.5
Cc08_g11240 Coffea canephora HOM05D001690 ORTHO05D002627 5.1e-10 68.2 64 54.7
Haze_12140 Corylus avellana HOM05D001690 ORTHO05D002627 5.1e-10 68.2 81 50.6
HanXRQChr11g0323641 Helianthus annuus HOM05D001690 ORTHO05D002627 5.1e-10 68.2 40 77.5
Nn3g16975 Nelumbo nucifera HOM05D001690 ORTHO05D002627 5.1e-10 68.2 42 76.2
HPP92_022398 Vanilla planifolia HOM05D001690 ORTHO05D002627 5.1e-10 68.2 74 55.4
HPP92_027514 Vanilla planifolia HOM05D001690 ORTHO05D002627 5.1e-10 68.2 74 55.4
CSS0013441 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 6.7e-10 67.8 67 53.7
MBI14_g34517_MAGBIO Magnolia biondii HOM05D001690 ORTHO05D002627 6.7e-10 67.8 67 55.2
Oeu012249.2 Olea europaea HOM05D001690 ORTHO05D002627 6.7e-10 67.8 40 72.5
Prupe.1G373800 Prunus persica HOM05D001690 ORTHO05D002627 6.7e-10 67.8 129 35.7
PGSC0003DMG400015576 Solanum tuberosum HOM05D001690 ORTHO05D002627 6.7e-10 67.8 41 70.7
Oeu025444.1 Olea europaea HOM05D001690 ORTHO05D002627 8.7e-10 67.4 41 73.2
MSTRG.618 Avicennia marina HOM05D001690 ORTHO05D002627 1.1e-09 67.0 68 45.6
Sabra08G0111800 Salix brachista HOM05D001690 ORTHO05D002627 1.1e-09 67.0 42 66.7
RcHm_v2.0_Chr6g0301731 Rosa chinensis HOM05D001690 ORTHO05D002627 1.5e-09 66.6 94 41.5
Migut.E00140 Erythranthe guttata HOM05D001690 ORTHO05D002627 1.9e-09 66.2 95 43.2
Phvul.003G055000 Phaseolus vulgaris HOM05D001690 ORTHO05D002627 1.9e-09 66.2 72 51.4
Sed0027377 Sechium edule HOM05D001690 ORTHO05D002627 1.9e-09 66.2 68 51.5
arahy.Tifrunner.gnm1.ann1.16295S Arachis hypogaea HOM05D001690 ORTHO05D002627 2.5e-09 65.9 41 73.2
arahy.Tifrunner.gnm1.ann1.84PEGK Arachis hypogaea HOM05D001690 ORTHO05D002627 2.5e-09 65.9 41 73.2
arahy.Tifrunner.gnm1.ann1.FENI28 Arachis hypogaea HOM05D001690 ORTHO05D002627 2.5e-09 65.9 41 73.2
RcHm_v2.0_Chr6g0245201 Rosa chinensis HOM05D001690 ORTHO05D002627 2.5e-09 65.9 65 52.3
CsaV3_5G025720 Cucumis sativus L. HOM05D001690 ORTHO05D002627 3.3e-09 65.5 100 41.0
PGSC0003DMG402016404 Solanum tuberosum HOM05D001690 ORTHO05D002627 3.3e-09 65.5 41 68.3
arahy.Tifrunner.gnm1.ann1.A2BAJG Arachis hypogaea HOM05D001690 ORTHO05D002627 4.3e-09 65.1 41 73.2
arahy.Tifrunner.gnm1.ann1.IPVE35 Arachis hypogaea HOM05D001690 ORTHO05D002627 5.6e-09 64.7 41 70.7
Ciclev10031867m.g Citrus clementina HOM05D001690 ORTHO05D002627 5.6e-09 64.7 67 49.3
Solyc01g008060.3 Solanum lycopersicum HOM05D001690 ORTHO05D002627 7.4e-09 64.3 41 65.9
Sopen01g003620 Solanum pennellii HOM05D001690 ORTHO05D002627 7.4e-09 64.3 41 65.9
arahy.Tifrunner.gnm1.ann1.R60S14 Arachis hypogaea HOM05D001690 ORTHO05D002627 9.6e-09 63.9 41 70.7
arahy.Tifrunner.gnm1.ann1.TA8DPM Arachis hypogaea HOM05D001690 ORTHO05D002627 9.6e-09 63.9 41 70.7
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.3e-08 63.5 42 71.4
MELO3C002906.2 Cucumis melo HOM05D001690 ORTHO05D002627 1.3e-08 63.5 96 40.6
MD15G1022000 Malus domestica HOM05D001690 ORTHO05D002627 1.3e-08 63.5 61 47.5
RcHm_v2.0_Chr4g0444511 Rosa chinensis HOM05D001690 ORTHO05D002627 1.3e-08 63.5 40 65.0
Actinidia33972 Actinidia chinensis HOM05D001690 ORTHO05D002627 2.1e-08 62.8 42 66.7
TAR629G1199 Trochodendron aralioides HOM05D001690 ORTHO05D002627 2.1e-08 62.8 68 50.0
VMungo0251G3618 Vigna mungo HOM05D001690 ORTHO05D002627 2.1e-08 62.8 72 45.8
Peaxi162Scf00097g01219 Petunia axillaris HOM05D001690 ORTHO05D002627 2.8e-08 62.4 41 63.4
Atru.chr8.2425 Acer truncatum HOM05D001690 ORTHO05D002627 3.7e-08 62.0 42 69.0
GSVIVG01032526001 Vitis vinifera HOM05D001690 ORTHO05D002627 3.7e-08 62.0 42 66.7
CSS0041273 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 4.8e-08 61.6 42 66.7
CSS0041634 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 4.8e-08 61.6 42 66.7
CDE02G3381 Ceratophyllum demersum HOM05D001690 ORTHO05D002627 4.8e-08 61.6 38 71.1
Eucgr.J02177 Eucalyptus grandis HOM05D001690 ORTHO05D002627 4.8e-08 61.6 38 76.3
FvH4_6g50271 Fragaria vesca HOM05D001690 ORTHO05D002627 4.8e-08 61.6 42 66.7
PSO832G0532 Papaver somniferum HOM05D001690 ORTHO05D002627 4.8e-08 61.6 85 43.5
QL02p077697 Quercus lobata HOM05D001690 ORTHO05D002627 4.8e-08 61.6 41 68.3
Rhsim08G0061200 Rhododendron simsii HOM05D001690 ORTHO05D002627 4.8e-08 61.6 42 69.0
RcHm_v2.0_Chr2g0170591 Rosa chinensis HOM05D001690 ORTHO05D002627 4.8e-08 61.6 42 66.7
PSO063G4956 Papaver somniferum HOM05D001690 ORTHO05D002627 6.2e-08 61.2 66 51.5
PGR083G2406 Punica granatum HOM05D001690 ORTHO05D002627 6.2e-08 61.2 42 64.3
Sp3g00650 Schrenkiella parvula HOM05D001690 ORTHO05D002627 6.2e-08 61.2 40 70.0
Hund12490 Selenicereus undatus HOM05D001690 ORTHO05D002627 8.1e-08 60.8 40 67.5
BcaB04g21416 Brassica carinata HOM05D001690 ORTHO05D002627 1.1e-07 60.5 42 64.3
BcaC09g47664 Brassica carinata HOM05D001690 ORTHO05D002627 1.1e-07 60.5 40 65.0
BolC1t05954H Brassica oleracea HOM05D001690 ORTHO05D002627 1.1e-07 60.5 40 65.0
Duzib268G0433 Durio zibethinus HOM05D001690 ORTHO05D002627 1.1e-07 60.5 41 68.3
FvH4_4g34981 Fragaria vesca HOM05D001690 ORTHO05D002627 1.1e-07 60.5 92 39.1
Ciclev10012229m.g Citrus clementina HOM05D001690 ORTHO05D002627 1.4e-07 60.1 42 64.3
AT3G01410 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 2.4e-07 59.3 45 60.0
EL10Ac2g03377 Beta vulgaris HOM05D001690 ORTHO05D002627 2.4e-07 59.3 42 66.7
AL3G10790 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 3.1e-07 58.9 45 60.0
CARHR075560 Cardamine hirsuta HOM05D001690 ORTHO05D002627 4.0e-07 58.5 42 61.9
AUR62039405 Chenopodium quinoa HOM05D001690 ORTHO05D002627 4.0e-07 58.5 42 64.3
Thhalv10021278m.g Eutrema salsugineum HOM05D001690 ORTHO05D002627 4.0e-07 58.5 42 61.9
Prupe.3G280000 Prunus persica HOM05D001690 ORTHO05D002627 4.0e-07 58.5 41 65.9
MD17G1039000 Malus domestica HOM05D001690 ORTHO05D002627 5.3e-07 58.2 41 63.4
BNapus_Darmor_BZH_scaffold_133p00060 Brassica napus HOM05D001690 ORTHO05D002627 1.2e-06 57.0 40 62.5
BraA01t04662Z Brassica rapa HOM05D001690 ORTHO05D002627 1.2e-06 57.0 40 62.5
Os08g0177800 Oryza sativa ssp. japonica HOM05D001690 ORTHO05D002627 1.2e-06 57.0 38 68.4
MD09G1038000 Malus domestica HOM05D001690 ORTHO05D002627 1.5e-06 56.6 41 63.4
Hma1.2p1_0375F.1_g139080 Hydrangea macrophylla HOM05D001690 ORTHO05D002627 2.0e-06 56.2 40 57.5
Hma1.2p1_0967F.1_g242413 Hydrangea macrophylla HOM05D001690 ORTHO05D002627 2.0e-06 56.2 40 57.5
Aa31LG11G14600 Aethionema arabicum HOM05D001690 ORTHO05D002627 2.6e-06 55.8 42 59.5
CDE05G3134 Ceratophyllum demersum HOM05D001690 ORTHO05D002627 2.6e-06 55.8 41 58.5
SHI21654 Sapria himalayana HOM05D001690 ORTHO05D002627 2.6e-06 55.8 48 60.4
Rhsim08G0056900 Rhododendron simsii HOM05D001690 ORTHO05D002627 3.4e-06 55.5 33 75.8
Gorai.007G077300 Gossypium raimondii HOM05D001690 ORTHO05D002627 4.5e-06 55.1 42 59.5
CANSAT64G0713 Cannabis sativa HOM05D001690 ORTHO05D002627 5.8e-06 54.7 41 58.5
CANSAT64G2730 Cannabis sativa HOM05D001690 ORTHO05D002627 5.8e-06 54.7 41 58.5


User provided reference genes

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