Gene: AT5G51080
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G51080
- Transcript Identifier AT5G51080.3
- Gene Type Coding gene
- Location Chr5 : 20769022-20770486 : negative
Gene Family Information
- ID HOM05D001690
- #Genes/#Species 383/98
- Phylogenetic origin
- ID ORTHO05D002627
- #Genes/#Species 274/87
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G51080.3
- uniprot Q84TE0
Descriptions
- Description RNase H family protein
- Computational description RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 2876 Blast hits to 2869 proteins in 551 species: Archae - 74; Bacteria - 1114; Metazoa - 4; Fungi - 0; Plants - 1278; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).
- Computational description RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 2888 Blast hits to 2881 proteins in 553 species: Archae - 74; Bacteria - 1122; Metazoa - 4; Fungi - 0; Plants - 1278; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0090502 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, endonucleolytic |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | Gene Ontology | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004523 | IDA IEA | Gene Ontology | RNA-DNA hybrid ribonuclease activity | 1 |
| GO:0004523 | IEA | InterPro | RNA-DNA hybrid ribonuclease activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0005739 | IDA | Gene Ontology | mitochondrion | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.3.6.2.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.ribonuclease (RNH1) |