Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G62990 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 8.1e-141 503.8 271 100.0
Carub.0001s4350 Capsella rubella HOM05D001027 ORTHO05D000844 7.0e-84 314.7 300 65.0
AT1G54260 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 2.7e-64 249.6 231 64.9
Sp1g40670 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.1e-57 227.6 288 50.7
Thhalv10012092m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 6.6e-34 148.7 168 51.8
AL1G63020 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 4.9e-29 132.5 113 68.1
Ca_23343_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 4.7e-16 89.4 288 27.8
Thecc.06G115200 Theobroma cacao HOM05D001027 ORTHO05D000844 4.7e-16 89.4 286 29.4
Gorai.009G143000 Gossypium raimondii HOM05D001027 ORTHO05D000844 6.2e-16 89.0 312 29.8
CiPaw.04G147800 Carya illinoinensis HOM05D001027 ORTHO05D000844 1.4e-15 87.8 288 29.9
Gohir.D05G138700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 1.4e-15 87.8 312 30.1
TPR.G7889 Trifolium pratense HOM05D000208 ORTHO05D000130 1.4e-15 87.8 262 29.8
TAR624G1250 Trochodendron aralioides HOM05D001027 ORTHO05D000844 1.8e-15 87.4 290 29.3
Duzib235G1421 Durio zibethinus HOM05D001027 ORTHO05D000844 2.4e-15 87.0 289 30.1
Gohir.A05G136700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 2.4e-15 87.0 312 28.8
CSS0035646 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 3.1e-15 86.7 273 26.4
CSS0046266 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 3.1e-15 86.7 273 26.4
COL.COLO4_30692 Corchorus olitorius HOM05D001027 ORTHO05D000844 3.1e-15 86.7 319 28.5
Manes.04G141700 Manihot esculenta HOM05D001027 ORTHO05D000844 5.3e-15 85.9 284 28.9
Thhalv10011866m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 6.9e-15 85.5 93 52.7
RcHm_v2.0_Chr2g0144441 Rosa chinensis HOM05D001027 ORTHO05D000844 6.9e-15 85.5 285 29.5
Lalb_Chr14g0372681 Lupinus albus HOM05D001027 ORTHO05D000844 4.4e-14 82.8 285 27.4
ClCG07G013890 Citrullus lanatus HOM05D001027 ORTHO05D000844 5.8e-14 82.4 284 27.5
THA.LOC104815633 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 5.8e-14 82.4 330 28.8
Cpa.g.sc25.81 Carica papaya HOM05D001027 ORTHO05D000844 7.6e-14 82.0 321 27.7
Peaxi162Scf00207g01353 Petunia axillaris HOM05D001027 ORTHO05D000844 9.9e-14 81.6 284 27.5
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 1.3e-13 81.3 284 26.1
Psat4g184920 Pisum sativum HOM05D001027 ORTHO05D000844 1.3e-13 81.3 300 28.0
Ciclev10026245m.g Citrus clementina HOM05D001027 ORTHO05D000844 1.7e-13 80.9 287 29.6
PGR119G1880 Punica granatum HOM05D001027 ORTHO05D000844 1.7e-13 80.9 278 27.3
TWI34G0703 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 1.7e-13 80.9 296 28.0
Cfa003055 Carpinus fangiana HOM05D001027 ORTHO05D000844 2.2e-13 80.5 298 28.5
VMungo0331G0967 Vigna mungo HOM05D001027 ORTHO05D000844 2.2e-13 80.5 294 27.6
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 3.8e-13 79.7 306 27.1
Glyma.07G007200 Glycine max HOM05D001027 ORTHO05D000844 3.8e-13 79.7 320 25.0
Glyma.08G189900 Glycine max HOM05D001027 ORTHO05D000844 4.9e-13 79.3 316 25.9
Aa31LG4G3090 Aethionema arabicum HOM05D001027 ORTHO05D000844 6.4e-13 79.0 327 28.7
Hma1.2p1_1128F.1_g259680 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 6.4e-13 79.0 275 27.6
Dinv42342 Davidia involucrata HOM05D001027 ORTHO05D000844 1.1e-12 78.2 291 26.8
QL02p062075 Quercus lobata HOM05D001027 ORTHO05D000844 1.1e-12 78.2 289 26.0
GSVIVG01015170001 Vitis vinifera HOM05D001027 ORTHO05D000844 1.9e-12 77.4 294 28.2
FvH4_6g34130 Fragaria vesca HOM05D001027 ORTHO05D000844 2.4e-12 77.0 286 28.3
Hma1.2p1_0672F.1_g200980 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 2.4e-12 77.0 290 26.9
TWI36G1153 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 2.4e-12 77.0 291 27.5
MD09G1188600 Malus domestica HOM05D001027 ORTHO05D000844 3.2e-12 76.6 290 27.2
Phvul.010G136000 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 3.2e-12 76.6 292 26.4
Ciclev10009173m.g Citrus clementina HOM05D001027 ORTHO05D000844 4.2e-12 76.3 281 28.1
Actinidia39707 Actinidia chinensis HOM05D001027 ORTHO05D000844 7.1e-12 75.5 317 27.4
CDE06G2372 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 7.1e-12 75.5 288 28.1
Potri.018G066300 Populus trichocarpa HOM05D001027 ORTHO05D000844 7.1e-12 75.5 291 25.1
Thhalv10018950m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 9.3e-12 75.1 297 28.6
FAN14G2106 Fragaria x ananassa HOM05D001027 ORTHO05D000844 1.2e-11 74.7 286 28.0
Lj5g0001171 Lotus japonicus HOM05D001027 ORTHO05D000844 1.6e-11 74.3 286 26.9
Sp5g27800 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.6e-11 74.3 300 27.7
Potri.006G147400 Populus trichocarpa HOM05D001027 ORTHO05D000844 2.1e-11 73.9 311 27.0
Nitab4.5_0005003g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 2.7e-11 73.6 277 27.1
Lj3g0001508 Lotus japonicus HOM05D001027 ORTHO05D000844 3.5e-11 73.2 300 27.0
Phvul.010G136100 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 3.5e-11 73.2 292 25.0
Aa31LG7G2060 Aethionema arabicum HOM05D001027 ORTHO05D000844 4.6e-11 72.8 298 26.5
ECA234G4183 Erigeron canadensis HOM05D001027 ORTHO05D000844 4.6e-11 72.8 292 24.7
Sed0025250 Sechium edule HOM05D001027 ORTHO05D000844 4.6e-11 72.8 286 25.5
Thecc.09G085000 Theobroma cacao HOM05D001027 ORTHO05D000844 4.6e-11 72.8 279 26.9
VMungo0331G0759 Vigna mungo HOM05D001027 ORTHO05D000844 4.6e-11 72.8 292 26.4
A07p38880 Brassica napus HOM05D000250 ORTHO05D000625 6.0e-11 72.4 302 28.8
THA.LOC104808049 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 6.0e-11 72.4 302 26.8
CiPaw.01G222500 Carya illinoinensis HOM05D001027 ORTHO05D000844 7.8e-11 72.0 289 26.0
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 1.0e-10 71.6 285 25.3
CSS0030254 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 1.3e-10 71.2 293 26.6
Lalb_Chr24g0396531 Lupinus albus HOM05D001027 ORTHO05D000844 1.3e-10 71.2 292 26.4
Manes.16G099700 Manihot esculenta HOM05D001027 ORTHO05D000844 1.3e-10 71.2 290 25.5
HanXRQChr10g0319501 Helianthus annuus HOM05D001027 ORTHO05D000844 1.7e-10 70.9 291 27.5
Sp1g15660 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.7e-10 70.9 299 26.4
Atru.chr7.1631 Acer truncatum HOM05D001027 ORTHO05D000844 2.3e-10 70.5 285 26.3
Cc04_g01670 Coffea canephora HOM05D001027 ORTHO05D000844 2.3e-10 70.5 284 26.8
CsaV3_3G043700 Cucumis sativus L. HOM05D000250 ORTHO05D000625 2.3e-10 70.5 283 23.7
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 2.3e-10 70.5 286 27.6
Duzib187G0581 Durio zibethinus HOM05D001027 ORTHO05D000844 3.9e-10 69.7 278 25.2
Gohir.D07G012300 Gossypium hirsutum HOM05D001027 ORTHO05D000844 3.9e-10 69.7 276 25.0
Nitab4.5_0001519g0120 Nicotiana tabacum HOM05D001027 ORTHO05D000844 3.9e-10 69.7 288 24.7
AT1G17520 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 5.1e-10 69.3 299 27.1
BcaC08g46715 Brassica carinata HOM05D000250 ORTHO05D000625 6.6e-10 68.9 301 28.2
PSO832G0706 Papaver somniferum HOM05D001027 ORTHO05D000844 6.6e-10 68.9 287 24.7
unitig_32.g11570 Utricularia gibba HOM05D001027 ORTHO05D000844 6.6e-10 68.9 272 28.7
Peaxi162Scf00494g00102 Petunia axillaris HOM05D001027 ORTHO05D000844 8.7e-10 68.6 287 25.8
Prupe.3G045300 Prunus persica HOM05D001027 ORTHO05D000844 8.7e-10 68.6 342 23.7
Nitab4.5_0003606g0040 Nicotiana tabacum HOM05D001027 ORTHO05D000844 1.1e-09 68.2 288 25.0
AL2G32420 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 1.5e-09 67.8 295 27.1
C05p15950 Brassica napus HOM05D001027 ORTHO05D000844 1.5e-09 67.8 299 26.8
BolC5t30297H Brassica oleracea HOM05D001027 ORTHO05D000844 1.5e-09 67.8 299 26.8
Carub.0001s1729 Capsella rubella HOM05D001027 ORTHO05D000844 1.5e-09 67.8 297 27.6
Migut.L01522 Erythranthe guttata HOM05D001027 ORTHO05D000844 1.5e-09 67.8 291 24.4
Eucgr.C00865 Eucalyptus grandis HOM05D001027 ORTHO05D000844 1.5e-09 67.8 280 28.9
AT1G72740 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 1.9e-09 67.4 290 27.2
C06p47030 Brassica napus HOM05D000250 ORTHO05D000625 1.9e-09 67.4 301 27.9
Sed0000203 Sechium edule HOM05D001027 ORTHO05D000844 1.9e-09 67.4 280 27.1
Sc18g0002280 Simmondsia chinensis HOM05D001027 ORTHO05D000844 1.9e-09 67.4 290 28.3
BcaB03g15012 Brassica carinata HOM05D000250 ORTHO05D000625 2.5e-09 67.0 283 27.2
Oeu009687.1 Olea europaea HOM05D001027 ORTHO05D000844 2.5e-09 67.0 298 26.5
Ah.13g077930 Amaranthus hybridus HOM05D001027 ORTHO05D000844 3.3e-09 66.6 305 25.9
PSO173G0140 Papaver somniferum HOM05D001027 ORTHO05D000844 3.3e-09 66.6 286 24.1
PGR142G1838 Punica granatum HOM05D001027 ORTHO05D000844 3.3e-09 66.6 291 25.8
BraA06t24497Z Brassica rapa HOM05D001027 ORTHO05D000844 4.3e-09 66.2 304 27.3
CAN.G52.16 Capsicum annuum HOM05D001027 ORTHO05D000844 4.3e-09 66.2 291 26.5
AL1G29820 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 7.3e-09 65.5 300 27.7
Gohir.A07G012500 Gossypium hirsutum HOM05D001027 ORTHO05D000844 7.3e-09 65.5 282 24.1
SalBow1G6362 Salvia bowleyana HOM05D001027 ORTHO05D000844 7.3e-09 65.5 289 26.3
TWI32G0968 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 7.3e-09 65.5 295 26.8
Carub.0002s1959 Capsella rubella HOM05D001027 ORTHO05D000844 9.6e-09 65.1 296 25.7
Actinidia26042 Actinidia chinensis HOM05D001027 ORTHO05D000844 1.3e-08 64.7 313 24.6
BolC8t51932H Brassica oleracea HOM05D001027 ORTHO05D000844 1.3e-08 64.7 300 23.7
BraA08t35017Z Brassica rapa HOM05D001027 ORTHO05D000844 1.3e-08 64.7 296 27.4
Cc06_g11670 Coffea canephora HOM05D001027 ORTHO05D000844 1.6e-08 64.3 291 26.1
BcaC07g38868 Brassica carinata HOM05D001027 ORTHO05D000844 2.1e-08 63.9 296 25.7
Nitab4.5_0009641g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 2.8e-08 63.5 279 26.5
Sabra18G0058800 Salix brachista HOM05D001027 ORTHO05D000844 2.8e-08 63.5 281 26.0
SabraUnG0005200 Salix brachista HOM05D001027 ORTHO05D000844 2.8e-08 63.5 281 26.0
Ca_01220_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 3.6e-08 63.2 201 29.4
MBI01_g16596_MAGBIO Magnolia biondii HOM05D001027 ORTHO05D000844 3.6e-08 63.2 287 25.8
PSO063G4045 Papaver somniferum HOM05D001027 ORTHO05D000844 3.6e-08 63.2 293 25.6
Rhsim05G0016500 Rhododendron simsii HOM05D001027 ORTHO05D000844 3.6e-08 63.2 289 24.6
MSTRG.22565 Avicennia marina HOM05D001027 ORTHO05D000844 4.8e-08 62.8 274 24.8
BcaC07g41376 Brassica carinata HOM05D001027 ORTHO05D000844 4.8e-08 62.8 300 23.3
Thhalv10008387m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 4.8e-08 62.8 289 26.6
Gorai.001G013000 Gossypium raimondii HOM05D001027 ORTHO05D000844 4.8e-08 62.8 268 24.3
Duzib150G0469 Durio zibethinus HOM05D001027 ORTHO05D000844 6.2e-08 62.4 272 26.1
Medtr8g018410 Medicago truncatula HOM05D001027 ORTHO05D000844 6.2e-08 62.4 295 23.7
BraA09t41406Z Brassica rapa HOM05D001027 ORTHO05D000844 8.1e-08 62.0 290 24.5
PSO832G4508 Papaver somniferum HOM05D001027 ORTHO05D000844 1.1e-07 61.6 296 25.7
Sopen07g019970 Solanum pennellii HOM05D001027 ORTHO05D000844 1.1e-07 61.6 290 25.9
Haze_25941 Corylus avellana HOM05D001027 ORTHO05D000844 1.4e-07 61.2 284 26.8
SalBow6G3916 Salvia bowleyana HOM05D001027 ORTHO05D000844 1.4e-07 61.2 273 24.9
THA.LOC104813296 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 1.4e-07 61.2 320 25.3
C08p43830 Brassica napus HOM05D001027 ORTHO05D000844 1.8e-07 60.8 290 23.1
Medtr2g099610 Medicago truncatula HOM05D001027 ORTHO05D000844 1.8e-07 60.8 335 22.7
ECA232G2258 Erigeron canadensis HOM05D001027 ORTHO05D000844 2.4e-07 60.5 278 25.2
Aa31LG7G2330 Aethionema arabicum HOM05D001027 ORTHO05D000844 3.1e-07 60.1 303 26.1
BolC6t39743H Brassica oleracea HOM05D000250 ORTHO05D000625 3.1e-07 60.1 289 28.0
Nn6g35538 Nelumbo nucifera HOM05D001027 ORTHO05D000844 3.1e-07 60.1 127 33.1
A06p13450 Brassica napus HOM05D001027 ORTHO05D000844 4.0e-07 59.7 289 24.6
A09p60340 Brassica napus HOM05D001027 ORTHO05D000844 4.0e-07 59.7 290 22.8
C08p18060 Brassica napus HOM05D001027 ORTHO05D000844 4.0e-07 59.7 286 25.2
BolC8t49438H Brassica oleracea HOM05D001027 ORTHO05D000844 4.0e-07 59.7 286 25.2
Oeu051298.2 Olea europaea HOM05D001027 ORTHO05D000844 4.0e-07 59.7 321 24.3
HPP92_006477 Vanilla planifolia HOM05D001027 ORTHO05D000844 4.0e-07 59.7 287 24.0
FAN05G5132 Fragaria x ananassa HOM05D000250 ORTHO05D000625 6.9e-07 58.9 270 25.9
MSTRG.9507 Avicennia marina HOM05D001027 ORTHO05D000844 9.0e-07 58.5 274 23.0
A08p30860 Brassica napus HOM05D001027 ORTHO05D000844 9.0e-07 58.5 286 26.9
Haze_15991 Corylus avellana HOM05D001027 ORTHO05D000844 9.0e-07 58.5 116 37.1
MELO3C013078.2 Cucumis melo HOM05D001027 ORTHO05D000844 9.0e-07 58.5 272 22.1
HanXRQChr12g0354691 Helianthus annuus HOM05D001027 ORTHO05D000844 9.0e-07 58.5 202 27.2
SGA_v2.0_scaffold21G09416 Striga asiatica HOM05D001027 ORTHO05D000844 9.0e-07 58.5 289 23.5
BcaC07g41377 Brassica carinata HOM05D001027 ORTHO05D000844 1.2e-06 58.2 300 24.0
COL.COLO4_18172 Corchorus olitorius HOM05D001027 ORTHO05D000844 1.2e-06 58.2 268 23.9
FAN09G2071 Fragaria x ananassa HOM05D000250 ORTHO05D000625 1.2e-06 58.2 292 25.3
MSTRG.26444 Avicennia marina HOM05D001027 ORTHO05D000844 1.5e-06 57.8 291 24.7
Solyc03g121840.3 Solanum lycopersicum HOM05D001027 ORTHO05D000844 2.0e-06 57.4 304 23.0
Os01g0708000 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 2.6e-06 57.0 279 27.2
vmacro17140 Vaccinium macrocarpon HOM05D001027 ORTHO05D000844 2.6e-06 57.0 350 24.6
SalBow7G4021 Salvia bowleyana HOM05D001027 ORTHO05D000844 3.4e-06 56.6 116 30.2
BcaB03g12995 Brassica carinata HOM05D001027 ORTHO05D000844 4.5e-06 56.2 296 25.0
Cfa003557 Carpinus fangiana HOM05D001027 ORTHO05D000844 4.5e-06 56.2 287 25.1
CARHR018120 Cardamine hirsuta HOM05D001027 ORTHO05D000844 5.8e-06 55.8 300 28.3
RcHm_v2.0_Chr2g0093821 Rosa chinensis HOM05D001027 ORTHO05D000844 7.6e-06 55.5 308 23.7
Sopen03g040660 Solanum pennellii HOM05D001027 ORTHO05D000844 7.6e-06 55.5 301 23.6
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 7.6e-06 55.5 127 30.7
Zm00001eb361200 Zea mays HOM05D001027 ORTHO05D000844 7.6e-06 55.5 284 24.6
Oeu039945.2 Olea europaea HOM05D001027 ORTHO05D000844 9.9e-06 55.1 139 30.9


User provided reference genes

Program Settings