Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 6.3e-213 743.8 367 100.0
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 9.7e-198 693.3 367 93.7
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 6.5e-194 680.6 363 92.8
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 2.9e-186 655.2 355 91.0
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 3.0e-183 645.2 355 90.7
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 4.5e-179 631.3 345 90.4
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 1.8e-172 609.4 349 87.4
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 2.4e-172 609.0 355 85.9
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 3.9e-170 601.7 356 86.5
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 1.1e-169 600.1 354 85.6
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 1.9e-169 599.4 344 87.2
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.5e-169 599.0 342 86.8
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.8e-168 595.5 343 86.9
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 1.1e-161 573.5 356 83.7
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 2.5e-153 545.8 349 78.5
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 9.3e-140 500.7 364 69.8
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 2.7e-139 499.2 371 67.9
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 5.6e-137 491.5 375 67.7
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 3.6e-136 488.8 371 67.4
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 1.5e-134 483.4 362 69.1
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 9.9e-134 480.7 303 77.2
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 6.4e-133 478.0 325 73.2
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 1.9e-132 476.5 326 71.5
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 2.4e-132 476.1 342 70.8
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 2.4e-132 476.1 375 66.7
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.4e-132 476.1 326 73.6
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 2.4e-132 476.1 343 70.8
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 4.2e-132 475.3 325 72.9
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 7.1e-132 474.6 399 63.2
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 9.3e-132 474.2 334 72.2
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 7.9e-131 471.1 370 67.6
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 1.5e-129 466.8 366 64.8
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 1.9e-129 466.5 325 72.9
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 3.3e-129 465.7 350 67.7
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 2.8e-128 462.6 362 66.9
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 1.1e-127 460.7 347 68.3
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.4e-127 460.3 372 64.2
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 1.4e-127 460.3 340 66.5
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 3.1e-127 459.1 370 63.0
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 3.1e-127 459.1 348 69.0
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 5.3e-127 458.4 315 71.4
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 6.9e-127 458.0 376 63.8
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 1.5e-126 456.8 337 67.7
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 1.5e-126 456.8 302 74.8
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 2.6e-126 456.1 327 67.9
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 9.9e-126 454.1 317 70.3
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 8.4e-125 451.1 344 65.4
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 7.1e-124 448.0 358 67.3
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 4.6e-123 445.3 329 67.2
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 1.0e-122 444.1 374 62.8
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 3.0e-122 442.6 355 64.2
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 3.0e-122 442.6 348 64.7
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 3.9e-122 442.2 373 62.7
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 6.7e-122 441.4 325 69.8
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 3.3e-121 439.1 351 62.4
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 5.6e-121 438.3 364 64.0
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 7.4e-121 438.0 361 64.0
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 1.3e-120 437.2 375 61.3
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 1.6e-120 436.8 347 65.4
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 3.7e-120 435.6 336 65.8
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 6.2e-120 434.9 342 64.0
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 8.2e-120 434.5 344 67.2
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 1.4e-119 433.7 360 61.9
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 9.0e-119 431.0 310 68.4
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 1.2e-118 430.6 348 64.7
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 2.6e-118 429.5 346 65.3
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 4.5e-118 428.7 340 65.3
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 1.7e-117 426.8 353 62.0
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 2.2e-117 426.4 353 61.2
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 2.9e-117 426.0 342 63.5
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 3.8e-117 425.6 305 66.2
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 6.5e-117 424.9 364 61.0
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 1.4e-116 423.7 366 60.9
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 2.5e-116 422.9 316 64.6
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.6e-115 418.7 294 68.7
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 1.0e-114 417.5 329 64.4
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.9e-113 413.3 369 56.1
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 3.3e-113 412.5 304 66.1
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 2.1e-112 409.8 367 57.5
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 1.1e-108 397.5 379 57.3
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.0e-106 391.0 339 61.9
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 2.3e-106 389.8 282 68.4
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 8.2e-104 381.3 365 54.8
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 6.5e-101 371.7 287 63.8
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 1.1e-100 370.9 321 56.1
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 2.5e-100 369.8 342 54.1
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.6e-99 367.1 353 53.5
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.0e-98 364.4 326 56.7
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.0e-98 364.4 326 56.7
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 3.0e-98 362.8 303 59.4
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 8.8e-98 361.3 306 57.8
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 2.0e-97 360.1 301 62.1
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.4e-95 354.0 288 62.5
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 1.5e-94 350.5 296 62.5
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 3.8e-93 345.9 295 59.0
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 6.5e-93 345.1 220 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 1.1e-92 344.4 309 55.7
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 1.2e-83 314.3 195 85.1
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.0e-82 311.2 312 53.5
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 1.8e-79 300.4 357 50.7
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 3.8e-77 292.7 365 45.5
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 8.8e-74 281.6 169 80.5
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 3.1e-71 273.1 169 78.7
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 1.6e-67 260.8 171 73.1
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 3.6e-67 259.6 249 54.6
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 1.8e-66 257.3 410 39.0
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 7.5e-65 251.9 406 38.4
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 4.6e-54 216.1 168 62.5
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 3.9e-53 213.0 127 79.5
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.1e-44 184.9 199 49.7
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 3.1e-34 150.2 123 61.8
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 1.3e-29 134.8 96 68.8
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 3.9e-21 106.7 305 28.5
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.1e-18 98.6 219 33.3
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 8.4e-16 89.0 57 73.7
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 7.1e-15 85.9 51 74.5
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.5e-12 78.2 144 31.2
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 1.7e-08 64.7 191 28.8


User provided reference genes

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