Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2836.2 1462 100.0
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2723.3 1466 96.1
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2672.9 1462 93.8
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2668.6 1462 94.1
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2647.5 1462 93.6
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2614.0 1462 91.9
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2610.1 1462 91.8
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2610.1 1472 91.5
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2606.6 1462 91.5
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2605.9 1472 91.2
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2588.5 1463 91.4
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2586.2 1470 91.3
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2585.4 1473 91.0
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2584.7 1464 90.9
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2583.9 1471 91.0
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2583.5 1472 90.7
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2581.2 1474 90.7
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2395.2 1438 86.0
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2394.0 1471 83.5
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2315.4 1342 89.9
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2226.1 1492 77.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2204.9 1493 76.1
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2195.6 1492 75.9
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2192.9 1492 75.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2191.8 1494 76.3
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2189.8 1491 76.2
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2182.1 1492 75.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2180.2 1496 75.3
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2159.8 1497 74.7
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2155.9 1490 74.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2155.6 1491 74.7
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2153.3 1492 74.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2147.9 1494 74.4
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2141.7 1497 73.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2138.6 1490 73.9
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2138.6 1491 73.9
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2137.1 1491 74.3
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2135.5 1493 73.9
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2130.9 1486 73.6
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2129.8 1489 73.7
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2129.0 1495 73.3
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2125.9 1490 73.9
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2125.9 1489 73.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2120.5 1485 73.8
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2119.0 1491 73.2
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2115.1 1486 73.9
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2112.4 1491 73.6
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2106.6 1491 73.0
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2104.7 1484 73.2
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2102.4 1491 72.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2098.9 1480 72.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2097.4 1495 72.3
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2094.3 1496 72.5
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2085.1 1493 71.5
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2082.8 1493 71.5
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2080.8 1493 71.3
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2080.8 1493 71.8
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2076.2 1493 71.3
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2072.7 1491 72.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2072.4 1528 70.5
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2063.9 1488 71.2
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2059.6 1488 71.2
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2059.3 1442 73.8
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1493 70.8
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2053.5 1491 71.4
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2052.7 1549 69.6
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2047.3 1485 71.6
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2045.4 1530 69.7
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2044.6 1492 71.1
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2041.9 1492 70.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2038.5 1493 70.8
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2035.0 1489 70.3
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2029.6 1488 70.3
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2028.1 1485 70.1
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2027.3 1484 71.2
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2021.1 1493 70.8
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2019.6 1492 69.9
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2010.7 1561 67.8
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2008.8 1489 69.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2003.0 1493 70.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1980.3 1544 67.2
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1979.9 1489 69.1
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1979.1 1489 68.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1958.7 1489 68.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1956.0 1478 68.1
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1941.4 1489 67.6
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1939.5 1484 68.5
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1935.2 1484 68.3
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1924.1 1477 67.5
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1918.7 1493 67.5
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1889.4 1473 67.4
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1887.1 1503 66.3
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1882.1 1571 63.8
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1857.8 1303 74.8
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1844.7 1305 73.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1832.4 1305 73.5
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1811.2 1283 73.5
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1808.5 1469 64.5
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1803.5 1590 62.5
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1740.7 1304 69.9
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1734.5 1209 74.1
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1728.0 1483 60.7
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1688.3 1392 66.6
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1669.8 1429 62.5
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1653.3 1439 62.0
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1640.2 1436 59.5
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1541.9 1526 55.1
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1537.3 1514 55.2
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1524.6 988 78.2
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1392.1 1402 56.4
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1315.8 1084 66.0
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1308.9 1206 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1272.7 1297 53.9
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1258.8 1364 52.7
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1209.9 1364 51.5
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.9e-305 1053.1 1260 50.6
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.9e-294 1014.2 736 73.9
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.4e-292 1010.4 750 69.5
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.7e-288 995.7 849 61.2
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 3.2e-252 876.3 771 61.3
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 3.6e-243 846.3 886 56.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.7e-232 810.8 909 53.2
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 8.6e-229 798.5 579 68.6
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.3e-226 790.4 709 59.5
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.4e-208 729.2 470 81.7
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.4e-202 711.4 612 61.3
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-185 655.2 601 60.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.4e-170 604.4 362 80.1
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 9.0e-162 575.9 740 45.5
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 3.9e-157 560.5 436 69.7
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.4e-146 525.4 478 62.8
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 5.3e-138 496.9 544 53.5
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.4e-114 417.2 750 39.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.3e-101 375.2 230 85.7
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 6.8e-101 373.6 1812 24.5
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.4e-90 337.4 445 45.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.6e-89 335.9 1346 27.9
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.2e-84 319.7 1620 24.9
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 2.0e-84 318.9 214 75.7
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.8e-77 295.8 395 47.1
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.4e-74 284.3 225 64.0
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.5e-68 266.2 155 78.1
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.6e-68 265.4 242 61.6
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 7.6e-68 263.8 152 78.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.3e-63 248.4 269 53.2
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.2e-60 240.0 195 61.0
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 5.5e-50 204.5 1359 23.2
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 6.3e-46 191.0 102 87.3
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 3.4e-44 185.3 155 64.5
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 7.9e-41 174.1 186 53.2
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.0e-40 172.2 336 38.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 6.9e-37 161.0 185 51.9
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.2e-33 150.2 218 47.7
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 2.1e-33 149.4 130 59.2
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.4e-32 146.7 107 71.0
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.3e-31 142.1 102 71.6
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.0e-24 120.6 101 65.3
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.0e-24 120.6 131 50.4
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.7e-22 112.1 55 89.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.0e-20 106.3 135 49.6
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.5e-20 105.5 64 76.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.0e-19 104.0 67 71.6
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-15 90.5 110 52.7
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 75.5
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.7e-14 86.7 53 75.5
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.1e-13 82.0 69 59.4
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 4.7e-09 68.6 50 64.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 6.1e-09 68.2 35 82.9


User provided reference genes

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