Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.1e-164 583.2 291 100.0
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 3.3e-164 581.6 291 99.7
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 7.1e-159 563.9 291 96.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.6e-158 562.8 291 96.6
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.6e-158 562.8 291 96.6
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 3.2e-151 538.5 293 92.5
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.3e-141 506.5 291 86.3
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 6.4e-136 487.6 294 85.4
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 3.2e-135 485.3 294 83.3
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 9.3e-135 483.8 294 82.3
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 6.0e-134 481.1 292 83.2
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 6.0e-134 481.1 295 82.4
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 9.3e-127 457.2 294 77.6
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.9e-120 434.9 292 74.3
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.0e-101 372.5 295 64.7
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 3.0e-101 372.5 292 64.0
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 6.7e-101 371.3 292 63.4
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.3e-100 369.0 295 65.1
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.4e-100 368.6 295 65.4
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 4.4e-100 368.6 291 64.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.4e-100 367.9 295 65.1
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.3e-99 367.1 294 62.9
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 2.8e-99 365.9 294 63.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 4.1e-98 362.1 291 62.2
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-97 360.5 294 63.6
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.9e-97 358.2 295 63.7
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.7e-96 356.7 296 62.5
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.4e-95 353.6 292 61.6
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 7.2e-95 351.3 291 60.8
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 3.6e-94 349.0 296 60.5
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 4.7e-94 348.6 292 60.3
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 8.0e-94 347.8 292 61.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.3e-93 346.3 294 61.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.0e-93 345.9 291 61.5
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.1e-92 344.0 295 59.3
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.7e-92 341.7 290 59.7
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-91 339.7 292 60.3
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.8e-91 339.3 292 59.2
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 3.7e-91 339.0 290 60.3
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 8.2e-91 337.8 297 59.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 8.2e-91 337.8 297 59.3
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.1e-90 337.4 292 59.2
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.1e-90 337.4 296 62.5
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 4.1e-90 335.5 235 67.2
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.2e-89 334.0 291 60.1
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.6e-89 333.6 304 57.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 2.6e-89 332.8 296 60.8
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.5e-89 332.4 280 61.8
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.5e-89 332.0 293 60.1
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 7.7e-89 331.3 294 56.1
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.3e-88 330.5 276 62.0
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.2e-88 329.7 287 58.5
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.9e-88 329.3 296 58.4
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.9e-88 329.3 296 58.4
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.9e-88 329.3 290 58.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 3.8e-88 328.9 350 53.4
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.1e-87 327.4 290 58.6
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 3.2e-87 325.9 290 57.9
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 4.2e-87 325.5 287 58.2
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 7.2e-87 324.7 292 58.6
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 7.2e-87 324.7 304 56.2
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 9.4e-87 324.3 293 57.0
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 9.4e-87 324.3 290 58.6
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 9.4e-87 324.3 292 59.9
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.2e-86 323.9 321 54.2
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.0e-85 320.9 263 63.9
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.0e-85 320.9 288 57.3
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.8e-85 320.1 264 62.5
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.0e-85 319.3 297 57.6
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.0e-85 319.3 290 60.3
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 5.2e-85 318.5 281 58.4
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.5e-84 317.0 294 58.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-84 317.0 263 60.5
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.5e-84 317.0 294 55.8
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 9.7e-84 314.3 277 59.9
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 2.8e-83 312.8 279 60.2
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.8e-83 312.8 293 56.3
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 3.7e-83 312.4 322 52.8
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 8.3e-83 311.2 289 59.2
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.4e-82 310.5 291 55.0
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 3.1e-82 309.3 221 66.1
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 3.1e-82 309.3 332 51.2
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 4.1e-82 308.9 293 56.3
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.6e-81 307.0 293 56.7
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.0e-81 306.6 269 57.6
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 5.9e-81 305.1 282 59.2
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 7.7e-81 304.7 261 59.8
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 2.9e-80 302.8 295 55.9
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 8.5e-80 301.2 299 55.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.9e-79 300.1 293 54.9
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.5e-79 299.7 287 55.1
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.5e-79 299.7 293 53.2
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-77 293.9 257 61.1
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.2e-76 290.8 207 67.1
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.2e-76 290.8 291 53.6
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 2.6e-76 289.7 206 67.0
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.7e-75 285.8 212 66.0
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 8.3e-75 284.6 275 55.6
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.4e-74 283.1 237 57.8
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 3.1e-74 282.7 290 53.1
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.1e-74 282.3 297 51.9
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 7.0e-74 281.6 225 63.1
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.0e-72 277.7 227 63.0
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 9.5e-71 271.2 226 60.6
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.6e-70 270.4 284 51.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.5e-65 252.3 256 53.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 5.9e-65 251.9 256 55.1
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.4e-61 240.7 282 47.9
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.6e-57 227.3 188 59.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.3e-53 213.4 209 54.5
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.8e-53 211.8 229 54.6
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.4e-50 203.4 242 45.9
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 4.1e-50 202.6 234 51.3
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 4.1e-50 202.6 216 52.8
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 9.2e-50 201.4 205 54.1
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.2e-49 201.1 287 42.9
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 4.6e-49 199.1 218 50.9
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 3.0e-48 196.4 299 37.8
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.9e-48 196.1 205 55.1
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 8.6e-48 194.9 177 57.1
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 8.6e-48 194.9 148 65.5
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 3.1e-45 186.4 272 43.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 1.7e-43 180.6 130 65.4
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.9e-43 179.9 122 68.9
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.1e-42 177.9 249 45.4
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 3.6e-38 162.9 114 65.8
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.2e-37 159.1 205 46.3
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.6e-36 156.8 105 69.5
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.4e-36 156.4 295 39.0
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.4e-34 150.2 170 50.6
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.1e-29 134.8 305 33.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.8e-28 129.0 142 52.8
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 5.8e-28 129.0 86 72.1
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 7.8e-25 118.6 199 40.7
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 3.9e-24 116.3 217 37.3
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.2e-17 94.7 173 39.9
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.1e-15 88.2 237 29.1
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 9.6e-15 85.1 258 27.1
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.1e-10 71.6 137 38.0
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.6e-06 57.8 59 55.9


User provided reference genes

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