Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.1e-294 1013.4 524 100.0
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 6.3e-291 1003.4 527 98.7
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 2.7e-286 988.0 525 97.5
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 7.9e-286 986.5 525 97.5
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 1.0e-285 986.1 525 97.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 8.2e-283 976.5 527 96.0
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 8.8e-269 929.9 528 90.9
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 8.3e-267 923.3 528 91.1
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.6e-265 919.1 522 91.4
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 4.2e-263 911.0 523 90.2
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 9.2e-258 893.3 524 88.7
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.1e-250 869.8 500 90.4
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.1e-247 859.8 524 84.9
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 4.0e-221 771.5 497 80.1
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.3e-208 729.9 516 73.3
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.3e-208 729.9 507 75.0
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.3e-208 729.2 493 75.7
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 5.1e-208 728.0 505 74.9
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 5.1e-208 728.0 507 72.4
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 5.6e-207 724.5 499 72.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 3.6e-206 721.8 494 74.9
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 8.1e-206 720.7 500 73.0
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 8.1e-206 720.7 491 71.9
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 8.1e-206 720.7 493 73.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.1e-205 720.3 495 74.7
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.4e-205 719.9 498 71.1
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.8e-205 719.5 501 74.1
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 6.9e-205 717.6 510 72.0
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 9.0e-205 717.2 491 73.7
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 2.6e-204 715.7 498 75.1
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.6e-204 715.7 498 71.3
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 2.9e-203 712.2 500 73.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 8.4e-203 710.7 520 70.6
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.9e-202 709.5 502 72.5
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.9e-202 709.5 499 73.7
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.4e-202 709.1 500 73.0
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.4e-202 709.1 507 72.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 3.2e-202 708.8 507 71.6
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 4.2e-202 708.4 490 72.2
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 5.5e-202 708.0 499 72.5
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 5.5e-202 708.0 499 72.5
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.2e-201 706.8 499 72.3
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.6e-201 706.4 502 72.5
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 1.6e-201 706.4 504 71.8
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 2.1e-201 706.1 492 73.0
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 4.6e-201 704.9 498 74.1
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 4.6e-201 704.9 500 72.0
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.0e-200 703.7 499 72.3
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 1.8e-200 703.0 500 72.2
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.8e-200 703.0 492 73.6
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 3.0e-200 702.2 479 74.5
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 3.0e-200 702.2 491 71.9
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 6.7e-200 701.0 503 71.4
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 8.7e-200 700.7 502 71.7
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 8.7e-200 700.7 487 72.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 8.7e-200 700.7 499 72.1
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.5e-199 699.9 492 73.0
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.5e-199 699.1 492 72.8
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 2.5e-199 699.1 493 73.8
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 4.3e-199 698.4 492 72.6
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 4.3e-199 698.4 495 69.9
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 5.6e-199 698.0 487 70.8
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 7.4e-199 697.6 521 69.5
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 7.4e-199 697.6 490 72.7
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 7.4e-199 697.6 493 72.8
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 9.6e-199 697.2 492 73.8
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 3.7e-198 695.3 500 71.6
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 4.8e-198 694.9 497 71.6
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 8.1e-198 694.1 500 71.6
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.4e-197 693.3 513 70.8
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 1.8e-197 693.0 494 72.3
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.8e-197 693.0 491 71.7
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 3.1e-197 692.2 491 70.7
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 6.9e-197 691.0 491 72.3
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 9.0e-197 690.6 497 71.6
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.2e-196 690.3 489 72.4
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.6e-196 689.1 490 70.8
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 4.5e-196 688.3 491 71.9
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 7.6e-196 687.6 513 70.8
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 1.0e-195 687.2 513 69.8
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.3e-195 686.8 522 69.0
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.2e-194 681.8 463 75.4
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 4.2e-194 681.8 489 70.8
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.1e-193 679.5 488 72.1
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 2.7e-193 679.1 491 70.5
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 4.6e-193 678.3 505 70.1
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 6.0e-193 677.9 471 72.8
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.1e-191 673.7 493 69.6
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 5.7e-191 671.4 488 70.5
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.0e-188 662.9 491 69.7
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 3.0e-184 649.0 483 68.5
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 4.3e-183 645.2 559 63.5
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 6.3e-182 641.3 437 73.5
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 2.1e-177 626.3 489 64.8
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 2.8e-174 615.9 495 65.3
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.0e-168 597.4 518 61.2
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.5e-167 593.6 479 63.7
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 9.1e-165 584.3 626 53.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 4.2e-162 575.5 473 63.4
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.2e-161 573.9 463 65.0
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 6.7e-160 568.2 501 58.7
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 1.5e-159 567.0 511 59.9
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.5e-156 555.8 385 72.5
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.3e-139 500.0 488 56.1
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.5e-130 470.7 409 59.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.4e-127 459.5 336 72.3
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 8.3e-118 428.3 371 65.2
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 3.3e-106 389.8 555 43.6
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.9e-101 374.0 267 70.8
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 9.6e-98 361.7 256 71.5
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 4.8e-73 279.6 368 44.8
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.0e-70 269.6 189 68.3
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 2.1e-68 264.2 280 55.0
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.7e-68 263.8 458 39.5
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-66 258.1 171 73.1
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.4e-59 235.0 157 73.2
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 1.4e-56 224.9 147 76.2
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 4.5e-55 219.9 254 46.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.2e-53 212.6 134 72.4
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 5.5e-45 186.4 121 74.4
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 8.8e-43 179.1 132 73.5
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 3.3e-42 177.2 142 70.4
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.7e-41 174.9 153 60.1
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.7e-33 148.3 172 51.7
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.2e-33 147.9 156 53.2
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.1e-32 145.6 295 36.9
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.1e-32 144.1 217 40.6
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-29 135.6 137 57.7
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-29 135.6 137 57.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.2e-28 132.1 95 69.5
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.6e-26 124.4 132 57.6
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 4.5e-23 113.6 117 53.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 8.0e-20 102.8 146 43.2
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.8e-18 96.7 62 75.8
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 2.3e-14 84.7 75 65.3
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 2.3e-14 84.7 201 31.3
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-14 84.3 82 59.8
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.1e-11 74.3 50 78.0
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-10 72.0 76 53.9
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 4.6e-07 60.5 72 47.2
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 3.0e-06 57.8 90 37.8
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 3.9e-06 57.4 102 35.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 3.9e-06 57.4 102 35.3
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 3.9e-06 57.4 109 33.9
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 5.1e-06 57.0 110 32.7
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 5.1e-06 57.0 102 35.3
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 5.1e-06 57.0 116 34.5
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 8.6e-06 56.2 110 32.7
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 8.6e-06 56.2 102 35.3
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 8.6e-06 56.2 102 35.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 8.6e-06 56.2 102 34.3


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