Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 0.0e+00 1269.6 632 100.0
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 0.0e+00 1262.3 632 99.4
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 0.0e+00 1222.2 632 96.4
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 0.0e+00 1222.2 632 96.4
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 0.0e+00 1222.2 632 96.4
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 0.0e+00 1124.4 641 89.1
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 0.0e+00 1081.2 660 84.5
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.3e-308 1061.6 661 82.3
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 2.1e-293 1011.9 660 79.1
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.4e-290 1000.3 660 78.3
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 4.9e-282 974.2 660 76.5
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 3.2e-273 944.9 660 75.2
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.3e-263 912.9 670 72.1
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.2e-237 825.9 668 65.6
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 8.5e-218 760.8 646 65.6
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.2e-214 750.4 641 65.1
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.9e-209 733.0 667 59.2
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 2.8e-208 729.2 674 59.2
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 1.8e-207 726.5 679 58.5
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.7e-205 719.9 665 58.5
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 4.9e-205 718.4 673 59.1
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.1e-204 717.2 674 57.9
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 1.1e-204 717.2 674 56.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.2e-203 713.8 678 57.4
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 7.8e-203 711.1 661 58.2
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 3.0e-202 709.1 675 57.2
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 6.6e-202 708.0 671 57.1
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.5e-201 706.8 658 56.5
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 5.6e-201 704.9 658 56.7
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 6.2e-200 701.4 658 56.5
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 8.9e-199 697.6 669 57.4
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.3e-197 693.7 659 56.3
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 4.9e-197 691.8 657 57.4
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 7.0e-196 688.0 674 55.6
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 3.5e-195 685.6 681 55.8
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.0e-194 684.1 658 57.8
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 3.0e-194 682.6 666 56.2
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 3.9e-194 682.2 701 53.8
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 6.6e-194 681.4 694 54.3
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 8.6e-194 681.0 695 53.4
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.5e-193 680.2 667 56.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.5e-193 680.2 677 54.9
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 7.3e-193 677.9 665 55.0
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 7.3e-193 677.9 714 53.5
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 4.7e-192 675.2 697 52.9
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.1e-191 674.1 665 55.9
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.5e-190 670.2 653 55.4
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.6e-190 669.5 662 53.6
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.9e-190 667.5 670 54.9
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.2e-189 666.4 670 55.1
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 4.9e-189 665.2 685 52.8
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.3e-189 664.5 694 54.6
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-188 663.3 682 55.0
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 7.1e-188 661.4 676 54.1
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.9e-185 653.3 656 56.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 3.3e-185 652.5 659 54.6
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 1.6e-184 650.2 660 54.8
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.8e-184 649.4 670 53.9
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.8e-184 649.4 675 52.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.7e-184 648.7 725 51.6
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.8e-183 646.7 600 59.3
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 8.4e-181 637.9 648 54.5
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 2.1e-176 623.2 739 49.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.8e-176 622.9 670 52.4
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 2.4e-175 619.8 843 44.5
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.7e-173 613.6 623 53.1
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.9e-172 610.1 608 55.1
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 5.4e-172 608.6 655 51.6
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 6.0e-171 605.1 694 50.3
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.3e-169 599.0 649 50.5
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 4.3e-169 599.0 593 55.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 3.8e-165 585.9 556 57.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 3.2e-164 582.8 643 51.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.6e-160 570.5 657 49.3
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.1e-160 570.1 624 55.9
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.3e-159 565.5 610 52.1
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 3.5e-155 552.7 669 48.4
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.1e-152 543.5 642 49.4
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 4.0e-151 539.3 556 55.0
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.2e-150 537.7 651 47.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 2.0e-150 537.0 632 48.7
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 5.5e-148 528.9 635 48.3
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 5.5e-148 528.9 642 47.7
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 5.5e-148 528.9 632 48.1
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.5e-147 526.2 618 49.2
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.6e-147 525.8 633 48.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.8e-143 513.8 589 51.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.1e-140 504.6 674 45.7
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 2.5e-137 493.4 527 51.8
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 3.3e-137 493.0 542 53.5
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.2e-132 476.5 489 52.4
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.1e-123 447.2 483 50.1
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.8e-122 444.1 513 48.3
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 3.0e-122 443.4 666 40.4
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 4.4e-121 439.5 561 48.1
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 2.5e-116 423.7 655 40.2
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 2.5e-116 423.7 641 40.2
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 3.1e-111 406.8 539 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 7.2e-108 395.6 641 38.1
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.4e-103 380.6 456 49.1
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.3e-101 374.0 761 35.5
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 8.3e-88 328.9 480 44.2
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 5.0e-85 319.7 225 70.7
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 6.6e-85 319.3 449 42.3
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 5.8e-81 306.2 552 37.0
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.5e-81 305.8 298 56.7
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 4.9e-80 303.1 912 28.0
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 2.1e-75 287.7 278 55.4
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.9e-68 264.6 267 55.1
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.4e-66 257.7 462 37.2
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 3.3e-60 237.3 171 70.8
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 4.4e-57 226.9 165 70.3
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.9e-55 221.5 410 36.8
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.2e-54 218.8 169 67.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.6e-54 218.4 177 65.5
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.1e-52 212.2 168 62.5
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 6.2e-51 206.5 314 43.3
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.4e-49 200.7 136 74.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.4e-47 193.4 147 66.7
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 1.2e-46 192.2 167 62.3
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.7e-43 180.6 175 52.6
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.9e-41 172.6 150 59.3
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.8e-40 170.6 335 35.8
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 9.3e-39 166.0 119 68.9
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.6e-38 165.2 660 26.5
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 2.7e-38 164.5 175 50.9
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.5e-38 164.1 144 59.0
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.8e-34 151.8 101 71.3
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.1e-31 142.5 340 32.1
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.6e-30 137.1 147 51.0
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 4.8e-27 127.1 123 48.0
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.5e-25 122.1 168 45.2
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.2e-23 114.4 88 63.6
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 2.7e-22 111.3 145 46.2
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.4e-21 109.0 257 31.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.4e-21 109.0 243 34.6
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-21 109.0 98 52.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.8e-21 108.6 90 64.4
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 6.9e-18 96.7 54 83.3
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 9.1e-18 96.3 52 84.6
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 9.1e-18 96.3 151 42.4
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.0e-17 95.1 173 33.5
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 2.5e-15 88.2 54 72.2
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 2.0e-12 78.6 145 34.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 4.8e-11 73.9 64 50.0
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.5e-09 68.9 62 51.6


User provided reference genes

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