Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1690.6 951 100.0
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1626.7 952 96.0
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1520.4 867 95.3
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1520.4 867 95.3
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1513.4 896 93.2
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 0.0e+00 1443.3 958 88.4
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 0.0e+00 1441.0 964 82.0
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 0.0e+00 1435.2 961 82.9
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 0.0e+00 1421.0 965 81.9
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1418.7 965 81.8
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 0.0e+00 1394.8 854 88.4
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 0.0e+00 1392.9 961 81.1
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 0.0e+00 1322.8 826 83.7
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 0.0e+00 1321.2 833 82.7
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 0.0e+00 1291.6 904 79.0
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 0.0e+00 1241.5 858 77.6
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 8.1e-305 1050.4 842 70.2
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 3.4e-271 938.7 801 63.3
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 1.0e-270 937.2 818 61.9
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.8e-265 919.1 965 55.0
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 4.8e-265 918.3 802 61.6
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 4.8e-265 918.3 908 57.3
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 3.1e-264 915.6 809 61.7
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 9.1e-264 914.1 848 60.0
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 9.1e-264 914.1 815 61.1
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 2.0e-263 912.9 861 58.9
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 5.9e-263 911.4 928 56.5
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.1e-260 902.9 825 60.1
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 2.7e-260 902.5 841 59.6
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.7e-260 902.5 814 60.4
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.0e-259 899.0 871 58.3
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.0e-259 899.0 872 58.7
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 1.2e-258 897.1 805 60.4
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 7.5e-258 894.4 834 59.0
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.3e-257 893.6 863 58.2
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 4.8e-257 891.7 889 56.8
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 3.1e-256 889.0 813 60.3
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.0e-255 886.3 820 59.8
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 1.0e-254 884.0 807 59.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.2e-254 882.9 804 59.3
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 3.8e-254 882.1 806 60.0
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 5.5e-253 878.2 802 61.2
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 1.2e-252 877.1 826 58.4
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 4.7e-252 875.2 873 56.5
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 4.7e-252 875.2 978 55.2
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 8.0e-252 874.4 887 56.0
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 1.0e-251 874.0 806 59.8
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 3.0e-251 872.5 804 58.3
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 4.0e-251 872.1 861 57.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 4.0e-251 872.1 843 57.1
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 4.0e-251 872.1 914 54.9
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 6.8e-251 871.3 860 56.5
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 2.0e-250 869.8 805 60.1
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.3e-249 867.1 919 54.5
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 1.7e-249 866.7 804 59.0
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.8e-249 865.9 910 55.8
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 4.1e-248 862.1 833 57.0
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 1.2e-247 860.5 937 53.7
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.0e-246 857.4 833 56.8
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.3e-246 857.1 860 55.9
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.3e-246 857.1 937 54.5
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 4.2e-245 852.0 927 53.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 5.5e-245 851.7 975 53.2
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 1.6e-244 850.1 743 62.2
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.1e-244 849.7 836 57.4
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.1e-244 849.7 948 53.2
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 3.6e-244 849.0 1021 53.7
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 6.8e-243 844.7 945 52.2
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 8.8e-243 844.3 809 57.7
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 3.4e-242 842.4 821 57.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 4.9e-241 838.6 805 57.8
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.4e-240 837.0 910 53.1
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 4.1e-240 835.5 820 57.4
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 5.4e-240 835.1 868 54.8
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 5.9e-239 831.6 931 53.5
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 1.0e-238 830.9 903 53.0
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.7e-238 830.1 856 56.8
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 1.7e-238 830.1 870 53.9
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 2.1e-236 823.2 849 54.8
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 2.3e-235 819.7 739 59.5
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 3.0e-235 819.3 798 58.1
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 4.0e-235 818.9 742 60.1
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 2.9e-233 812.8 903 51.9
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 1.4e-232 810.4 944 50.4
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 3.0e-230 802.7 866 53.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.1e-229 800.8 863 53.7
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.2e-228 797.3 561 77.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.7e-223 779.6 922 50.9
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.1e-221 774.2 695 60.1
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 7.5e-218 761.5 803 53.8
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 1.3e-214 750.7 806 52.2
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 2.9e-209 733.0 912 49.0
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 6.0e-207 725.3 914 48.5
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 2.5e-205 719.9 800 52.4
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 1.2e-204 717.6 885 49.0
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 6.2e-204 715.3 727 55.2
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 7.8e-199 698.4 888 50.0
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 9.6e-197 691.4 845 48.8
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 3.9e-182 642.9 762 49.3
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 5.3e-155 552.7 875 42.5
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.0e-150 537.0 901 41.5
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.4e-147 528.1 506 56.1
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 2.2e-132 477.6 846 39.0
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 4.5e-130 469.9 877 39.0
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 2.9e-129 467.2 673 45.9
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 2.7e-122 444.1 441 55.3
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 9.5e-104 382.5 351 55.6
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 1.2e-93 349.0 323 65.0
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 3.4e-85 320.9 1007 30.5
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.1e-81 307.0 224 71.0
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 9.6e-72 276.2 527 38.0
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.7e-60 238.8 739 31.8
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 3.1e-46 191.4 276 41.3
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.4e-41 176.0 191 51.8
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.3e-41 175.3 107 79.4
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 2.4e-38 165.2 106 75.5
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 5.2e-33 147.5 232 40.5
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 7.2e-27 127.1 91 73.6
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.2e-23 115.5 186 38.7
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-22 113.2 146 41.8
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 2.5e-19 102.1 73 68.5
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.2e-10 73.2 46 76.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 5.7e-08 64.3 75 38.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.7e-07 61.6 75 37.3
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 4.9e-07 61.2 75 37.3
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.8e-06 59.3 73 37.0


User provided reference genes

Program Settings