Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p00800 Brassica napus HOM05D001670 ORTHO05D002980 7.2e-231 803.5 397 100.0
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 3.6e-206 721.5 377 96.0
BcaC04g24208 Brassica carinata HOM05D001670 ORTHO05D002980 3.4e-180 635.2 380 85.5
BolC9t52941H Brassica oleracea HOM05D001670 ORTHO05D002980 2.2e-179 632.5 380 85.3
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 2.3e-176 622.5 383 85.6
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.7e-139 500.0 439 66.1
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 2.7e-116 422.9 440 55.9
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 8.8e-112 407.9 440 54.8
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 4.4e-111 405.6 439 53.8
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 4.1e-109 399.1 436 53.9
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 4.1e-109 399.1 458 52.6
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 4.5e-108 395.6 438 53.9
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 8.6e-107 391.3 436 54.1
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 8.6e-107 391.3 436 54.1
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 3.3e-106 389.4 438 53.0
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 9.5e-106 387.9 434 52.3
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 9.5e-106 387.9 442 53.2
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 4.7e-105 385.6 465 50.8
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.4e-104 384.0 432 52.1
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 2.3e-104 383.3 436 51.4
C08p54060 Brassica napus HOM05D001670 ORTHO05D002980 2.3e-104 383.3 436 51.4
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 5.2e-104 382.1 435 52.0
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 5.2e-104 382.1 444 51.1
BcaNung05012 Brassica carinata HOM05D001670 ORTHO05D002980 6.8e-104 381.7 434 51.4
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.2e-103 380.9 434 52.1
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.5e-103 380.6 433 52.2
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 2.6e-103 379.8 438 52.5
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 7.5e-103 378.3 436 51.8
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 6.3e-102 375.2 424 51.4
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 6.3e-102 375.2 439 52.4
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 8.3e-102 374.8 438 50.2
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.3e-99 367.5 450 49.6
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 7.0e-93 345.1 455 44.0
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.0e-91 339.7 447 44.7
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.9e-90 337.0 456 44.7
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 7.3e-90 335.1 455 43.5
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.7e-89 332.4 436 45.2
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.0e-88 329.3 436 44.5
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 6.8e-88 328.6 441 42.9
Gohir.D11G082433 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.6e-87 326.6 438 44.3
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 4.4e-87 325.9 437 44.2
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 5.8e-87 325.5 436 44.0
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 7.5e-87 325.1 441 42.4
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 7.5e-87 325.1 439 43.5
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.2e-86 323.6 438 42.0
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 4.9e-86 322.4 446 43.7
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 3.2e-85 319.7 439 42.6
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.6e-84 317.4 438 42.7
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 1.6e-84 317.4 438 43.6
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.6e-84 317.4 438 42.9
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 2.1e-84 317.0 455 41.8
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 2.7e-84 316.6 440 41.8
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.5e-84 316.2 440 43.6
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.5e-84 316.2 440 42.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 6.0e-84 315.5 440 42.0
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 7.8e-84 315.1 440 42.0
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 7.8e-84 315.1 440 42.0
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 1.3e-83 314.3 439 41.9
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.3e-83 314.3 440 42.0
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.7e-83 313.9 439 43.3
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.7e-83 313.9 439 42.6
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.3e-83 313.5 440 41.8
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 2.3e-83 313.5 438 42.5
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 5.1e-83 312.4 441 42.0
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 8.6e-83 311.6 431 44.1
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 8.6e-83 311.6 439 41.7
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 8.6e-83 311.6 439 41.9
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 1.1e-82 311.2 404 45.5
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 1.5e-82 310.8 458 40.6
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 2.5e-82 310.1 450 41.6
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.3e-82 309.7 441 42.4
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 4.3e-82 309.3 441 42.4
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 2.1e-81 307.0 434 41.9
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 3.6e-81 306.2 445 42.5
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 3.6e-81 306.2 438 40.2
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.1e-80 304.7 439 42.1
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.1e-80 304.7 442 41.4
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 1.4e-80 304.3 441 42.6
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 2.3e-80 303.5 438 40.9
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.2e-79 301.2 440 39.8
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 2.6e-79 300.1 433 41.6
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 3.4e-79 299.7 458 40.0
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 5.8e-79 298.9 459 40.5
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 9.9e-79 298.1 440 39.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.7e-78 297.4 276 57.6
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.2e-78 297.0 441 40.1
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 6.4e-78 295.4 448 39.7
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 8.3e-78 295.0 433 40.4
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 8.3e-78 295.0 457 40.0
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.4e-77 294.3 438 40.2
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.4e-77 294.3 438 39.3
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 2.4e-77 293.5 437 39.8
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.4e-77 293.5 442 40.5
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 3.2e-77 293.1 440 40.2
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.2e-77 293.1 458 37.8
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.2e-77 293.1 439 41.5
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 5.4e-77 292.4 443 40.0
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 7.1e-77 292.0 411 41.8
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.6e-76 290.8 448 38.8
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 2.1e-76 290.4 399 44.6
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.7e-76 290.0 443 39.5
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.6e-76 289.3 288 53.1
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 6.0e-76 288.9 440 40.5
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 1.0e-75 288.1 456 37.7
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.3e-75 287.7 455 38.9
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 3.0e-75 286.6 436 37.4
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 8.6e-75 285.0 456 40.4
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 8.6e-75 285.0 439 39.6
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.5e-74 284.3 458 38.6
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.9e-74 283.9 442 39.4
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.9e-74 283.9 458 38.6
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 4.3e-74 282.7 439 38.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 7.3e-74 282.0 426 40.4
unitig_0.g1315 Utricularia gibba HOM05D001670 ORTHO05D002980 2.8e-73 280.0 454 37.9
CDE11G0683 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 6.2e-73 278.9 439 40.5
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.4e-72 277.7 415 41.4
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.1e-72 276.6 269 55.0
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.0e-72 276.2 269 53.5
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 5.2e-72 275.8 440 38.0
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 5.2e-72 275.8 405 42.2
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.5e-71 274.2 436 37.8
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.0e-71 273.9 425 39.8
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 2.6e-71 273.5 437 38.4
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 5.8e-71 272.3 441 38.1
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 7.6e-71 271.9 435 38.4
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 8.4e-70 268.5 437 37.3
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 1.1e-69 268.1 471 37.6
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 1.4e-69 267.7 444 39.0
CSS0024398 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.4e-69 266.9 268 53.0
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.4e-69 266.9 444 39.4
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 1.2e-68 264.6 403 39.0
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 2.7e-68 263.5 434 38.5
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 3.9e-67 259.6 440 35.7
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 5.1e-67 259.2 265 54.0
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 2.8e-65 253.4 287 47.0
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 4.0e-64 249.6 436 35.3
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 3.8e-62 243.0 276 48.6
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 6.4e-62 242.3 461 35.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 6.4e-62 242.3 433 35.8
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 2.4e-61 240.4 467 36.0
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 5.4e-61 239.2 438 34.0
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.0e-59 235.0 437 33.9
vmacro06810 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.7e-59 234.2 220 54.1
MBI03_g02274_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.1e-58 231.5 228 53.1
MBI14_g46621_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.4e-56 223.8 232 50.9
SHI13579 Sapria himalayana HOM05D001670 ORTHO05D002980 1.2e-55 221.5 278 43.2
MBI15_g00866_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 2.4e-53 213.8 205 53.2
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.5e-52 209.9 440 33.4
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 5.1e-51 206.1 440 32.0
MBI02_g32971_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 8.1e-49 198.7 205 50.2
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 4.9e-46 189.5 437 33.2
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 8.4e-46 188.7 232 43.5
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.5e-44 183.3 437 32.5
CAN.G78.29 Capsicum annuum HOM05D001670 ORTHO05D002980 6.0e-44 182.6 194 51.0
PGSC0003DMG401000201 Solanum tuberosum HOM05D001670 ORTHO05D002980 2.8e-41 173.7 186 50.0
Lsat_1_v5_gn_8_148781 Lactuca sativa HOM05D001670 ORTHO05D002980 7.6e-39 165.6 245 40.0
CSS0045688 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 4.2e-37 159.8 259 39.8
CSS0019437 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 2.7e-36 157.1 192 44.3
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 6.7e-35 152.5 270 34.8
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 3.4e-31 140.2 116 59.5
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.1e-28 131.0 138 47.1
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.1e-28 129.4 111 53.2
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 1.8e-27 127.9 221 33.9
Actinidia12668 Actinidia chinensis HOM05D001670 ORTHO05D011598 2.3e-27 127.5 255 32.9
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 3.0e-27 127.1 107 58.9
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.7e-25 121.3 95 56.8
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 4.5e-23 113.2 237 30.4
Actinidia21286 Actinidia chinensis HOM05D001670 ORTHO05D011598 1.7e-22 111.3 144 43.1
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 2.2e-22 110.9 209 35.4
Actinidia12669 Actinidia chinensis HOM05D001670 ORTHO05D002980 2.5e-21 107.5 86 59.3
MBI16_g24355_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.8e-19 101.3 130 42.3
PGSC0003DMG400000049 Solanum tuberosum HOM05D001670 ORTHO05D002980 2.3e-19 100.9 184 38.6
BolC5t28802H Brassica oleracea HOM05D001670 ORTHO05D041260 1.7e-17 94.7 121 48.8
HanXRQChr16g0519691 Helianthus annuus HOM05D001670 ORTHO05D002980 9.1e-16 89.0 97 47.4
C02p43710 Brassica napus HOM05D001670 ORTHO05D002980 2.1e-12 77.8 53 67.9
MBI05_g15359_MAGBIO Magnolia biondii HOM05D003323 ORTHO05D011598 8.0e-12 75.9 64 56.2
ECA234G2815 Erigeron canadensis HOM05D001670 ORTHO05D002980 3.3e-10 70.5 99 37.4
C05p00120 Brassica napus HOM05D001670 ORTHO05D041260 2.8e-09 67.4 49 65.3
MBI05_g28277_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 5.0e-06 56.6 77 39.0


User provided reference genes

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