Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-23 112.1 59 100.0
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 4.8e-22 107.1 61 96.7
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 4.8e-22 107.1 61 96.7
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 4.8e-22 107.1 61 96.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 4.8e-22 107.1 61 96.7
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 7.7e-20 99.8 61 90.2
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-19 99.4 61 88.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.2e-19 98.2 61 86.9
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 5.0e-19 97.1 61 86.9
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.4e-18 95.5 61 85.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.4e-18 95.5 61 83.6
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 4.2e-18 94.0 61 85.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 5.5e-18 93.6 61 85.2
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.6e-17 92.0 61 83.6
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 3.6e-17 90.9 61 80.3
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 3.6e-17 90.9 61 80.3
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 4.6e-17 90.5 60 83.3
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.5e-15 85.5 57 75.4
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.5e-15 85.5 58 81.0
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 5.7e-15 83.6 59 76.3
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 5.7e-15 83.6 55 76.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.2e-14 81.6 54 77.8
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.2e-14 81.6 61 72.1
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.7e-14 80.9 53 75.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 8.2e-14 79.7 61 73.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.1e-13 79.3 61 73.8
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.1e-13 79.3 63 69.8
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 9.1e-13 76.3 62 66.1
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 5.9e-12 73.6 45 82.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 7.7e-12 73.2 55 65.5
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.3e-11 72.4 62 61.3
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.3e-11 72.4 54 64.8
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.7e-11 72.0 58 63.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.9e-11 71.2 56 69.6
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.0e-11 70.5 56 62.5
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.5e-11 70.1 63 63.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 6.5e-11 70.1 63 63.5
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.1e-10 69.3 51 70.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.9e-10 68.6 50 66.0
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.5e-10 68.2 53 58.5
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 3.2e-10 67.8 51 62.7
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 4.2e-10 67.4 58 58.6
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 4.2e-10 67.4 56 60.7
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.5e-10 67.0 54 61.1
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.5e-10 67.0 54 61.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.5e-10 67.0 57 68.4
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 5.5e-10 67.0 63 58.7
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 7.2e-10 66.6 63 60.3
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 9.4e-10 66.2 63 58.7
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.4e-10 66.2 63 61.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.2e-09 65.9 58 60.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.6e-09 65.5 57 66.7
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.6e-09 65.5 57 66.7
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.6e-09 65.5 60 56.7
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.6e-09 65.5 63 55.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.6e-09 65.5 63 55.6
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.1e-09 65.1 58 58.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.1e-09 65.1 63 55.6
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 2.7e-09 64.7 57 66.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.7e-09 64.7 53 60.4
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.7e-09 64.7 59 62.7
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.7e-09 64.7 53 60.4
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.7e-09 63.9 56 58.9
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.7e-09 63.9 56 60.7
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 4.7e-09 63.9 51 66.7
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 4.7e-09 63.9 51 64.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.7e-09 63.9 56 58.9
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 6.1e-09 63.5 51 60.8
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 6.1e-09 63.5 53 60.4
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 6.1e-09 63.5 58 55.2
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.9e-09 63.2 56 58.9
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 7.9e-09 63.2 53 56.6
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 7.9e-09 63.2 59 61.0
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 7.9e-09 63.2 51 62.7
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 7.9e-09 63.2 56 58.9
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 7.9e-09 63.2 56 57.1
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.0e-08 62.8 56 58.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-08 62.8 57 61.4
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.0e-08 62.8 53 58.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.4e-08 62.4 56 60.7
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.4e-08 62.4 58 58.6
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-08 62.4 56 58.9
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.8e-08 62.0 53 58.5
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.8e-08 62.0 53 58.5
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.8e-08 62.0 58 55.2
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.8e-08 62.0 56 57.1
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.8e-08 62.0 53 56.6
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.3e-08 61.6 60 56.7
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.0e-08 61.2 56 57.1
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 3.0e-08 61.2 53 54.7
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.0e-08 61.2 53 58.5
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 3.9e-08 60.8 60 56.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 3.9e-08 60.8 56 57.1
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 5.1e-08 60.5 53 56.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 5.1e-08 60.5 61 54.1
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 6.7e-08 60.1 51 56.9
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.8e-08 59.7 55 54.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 8.8e-08 59.7 56 55.4
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.5e-07 58.9 53 50.9
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.0e-07 58.5 56 55.4
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.0e-07 58.5 53 50.9
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.6e-07 58.2 56 53.6
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 4.4e-07 57.4 53 49.1
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 4.4e-07 57.4 56 53.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 4.4e-07 57.4 56 55.4
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 4.4e-07 57.4 58 55.2
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 5.7e-07 57.0 53 52.8
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 5.7e-07 57.0 61 50.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 5.7e-07 57.0 61 50.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 5.7e-07 57.0 56 57.1
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 7.4e-07 56.6 56 53.6
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 2.2e-06 55.1 58 53.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.2e-06 55.1 58 53.4
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.8e-06 54.7 53 49.1
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.7e-06 54.3 62 53.2
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 4.8e-06 53.9 60 51.7


User provided reference genes

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