Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p26960 Brassica napus HOM05D001374 ORTHO05D004296 1.4e-121 439.5 207 100.0
BraA08t34642Z Brassica rapa HOM05D001374 ORTHO05D004296 1.7e-85 319.7 190 83.2
BcaC01g01691 Brassica carinata HOM05D001374 ORTHO05D004296 1.5e-65 253.4 159 81.1
BolC3t19594H Brassica oleracea HOM05D001374 ORTHO05D004296 1.5e-65 253.4 159 81.1
C03p72940 Brassica napus HOM05D001374 ORTHO05D004296 4.7e-64 248.4 159 79.9
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 6.7e-63 244.6 160 77.5
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 9.7e-62 240.7 177 71.2
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 1.3e-61 240.4 159 76.7
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 1.3e-61 240.4 159 76.7
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 1.3e-61 240.4 159 76.7
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 6.3e-61 238.0 159 76.1
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 3.1e-60 235.7 159 76.1
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 3.1e-60 235.7 159 74.8
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 7.7e-59 231.1 363 39.4
BcaB03g12025 Brassica carinata HOM05D001374 ORTHO05D004296 1.0e-58 230.7 135 84.4
BcaB03g12026 Brassica carinata HOM05D001374 ORTHO05D004296 1.0e-58 230.7 135 84.4
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 3.8e-58 228.8 159 71.7
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 5.0e-58 228.4 159 71.7
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 7.2e-57 224.6 136 80.1
SGA_v2.0_scaffold32G13114 Striga asiatica HOM05D001374 ORTHO05D004296 1.8e-52 209.9 212 53.3
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 4.1e-52 208.8 136 75.7
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 7.0e-52 208.0 335 38.5
AL6G31240 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 9.1e-52 207.6 141 72.3
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 5.9e-51 204.9 165 62.4
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 2.3e-50 203.0 159 66.0
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 2.9e-50 202.6 159 64.8
AUR62037316 Chenopodium quinoa HOM05D001374 ORTHO05D004296 2.1e-48 196.4 135 71.1
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 4.7e-48 195.3 165 58.8
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 4.7e-48 195.3 159 62.9
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 6.1e-48 194.9 159 61.6
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 6.1e-48 194.9 188 54.3
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 4.0e-47 192.2 188 54.3
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 4.0e-47 192.2 159 61.0
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 5.2e-47 191.8 159 61.6
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 5.2e-47 191.8 338 35.5
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 6.8e-47 191.4 364 34.1
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 1.2e-46 190.7 136 68.4
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 1.2e-46 190.7 362 34.3
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.5e-46 190.3 165 59.4
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 2.0e-46 189.9 165 58.8
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 2.0e-46 189.9 340 35.6
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 3.4e-46 189.1 159 60.4
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 3.4e-46 189.1 136 66.2
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 3.4e-46 189.1 363 34.7
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 4.4e-46 188.7 136 66.9
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 4.4e-46 188.7 125 72.8
Actinidia14906 Actinidia chinensis HOM05D001374 ORTHO05D004296 5.7e-46 188.3 340 35.0
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 5.7e-46 188.3 292 41.1
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 5.7e-46 188.3 363 34.2
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 9.8e-46 187.6 136 68.4
Glyma.20G117100 Glycine max HOM05D001374 ORTHO05D004296 9.8e-46 187.6 136 66.2
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 9.8e-46 187.6 136 70.6
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 9.8e-46 187.6 143 65.0
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 1.3e-45 187.2 136 68.4
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 1.3e-45 187.2 338 35.2
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 1.7e-45 186.8 363 33.9
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 1.7e-45 186.8 136 65.4
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 1.7e-45 186.8 136 66.2
Atru.chr7.1031 Acer truncatum HOM05D001374 ORTHO05D004296 2.2e-45 186.4 155 60.6
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.2e-45 186.4 363 33.9
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 2.2e-45 186.4 340 35.6
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 2.2e-45 186.4 340 35.0
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 2.2e-45 186.4 149 61.1
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.2e-45 186.4 136 68.4
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.8e-45 186.0 340 35.9
Lj6C756T1 Lonicera japonica HOM05D001374 ORTHO05D004296 2.8e-45 186.0 136 67.6
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 3.7e-45 185.7 321 36.4
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 3.7e-45 185.7 159 59.7
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 3.7e-45 185.7 136 64.7
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 4.9e-45 185.3 136 68.4
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 4.9e-45 185.3 340 35.9
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 4.9e-45 185.3 139 65.5
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 6.3e-45 184.9 159 59.7
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 6.3e-45 184.9 146 62.3
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 6.3e-45 184.9 136 65.4
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 8.3e-45 184.5 340 35.0
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 1.1e-44 184.1 340 34.7
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 1.1e-44 184.1 363 33.6
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.1e-44 184.1 340 34.7
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 1.4e-44 183.7 159 59.1
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 1.4e-44 183.7 343 34.7
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 1.4e-44 183.7 136 66.2
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.8e-44 183.3 136 66.2
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.8e-44 183.3 340 34.7
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 1.8e-44 183.3 136 66.2
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 2.4e-44 183.0 159 58.5
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 2.4e-44 183.0 136 64.7
CDE06G1000 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 3.1e-44 182.6 339 34.5
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 3.1e-44 182.6 340 35.3
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 4.1e-44 182.2 135 65.2
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 5.4e-44 181.8 188 51.6
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 7.0e-44 181.4 136 64.7
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 9.2e-44 181.0 136 64.7
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 9.2e-44 181.0 136 64.7
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 9.2e-44 181.0 340 34.1
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.2e-43 180.6 339 34.2
Dinv21063 Davidia involucrata HOM05D001374 ORTHO05D004296 1.2e-43 180.6 135 65.2
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 1.2e-43 180.6 340 33.5
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 1.2e-43 180.6 173 53.2
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 1.6e-43 180.3 136 64.7
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.6e-43 180.3 340 34.1
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.6e-43 180.3 136 66.9
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 2.0e-43 179.9 155 59.4
SEGI_13900 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 2.0e-43 179.9 136 63.2
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 2.7e-43 179.5 340 34.1
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 2.7e-43 179.5 165 56.4
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 2.7e-43 179.5 340 33.8
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 2.7e-43 179.5 340 33.8
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 4.5e-43 178.7 339 33.6
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 4.5e-43 178.7 340 33.5
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 4.5e-43 178.7 135 63.7
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 1.0e-42 177.6 361 33.0
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 1.3e-42 177.2 159 56.6
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 1.3e-42 177.2 149 59.7
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 2.3e-42 176.4 339 33.6
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 2.9e-42 176.0 159 57.2
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 2.9e-42 176.0 339 33.6
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 2.9e-42 176.0 162 58.0
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 5.0e-42 175.3 340 33.8
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 6.6e-42 174.9 332 34.9
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 6.6e-42 174.9 339 33.9
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 1.5e-41 173.7 340 33.2
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 2.5e-41 172.9 135 63.7
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 5.6e-41 171.8 136 65.4
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 5.6e-41 171.8 135 61.5
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 5.6e-41 171.8 132 62.9
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 7.3e-41 171.4 159 54.7
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.6e-40 170.2 133 61.7
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 2.8e-40 169.5 147 60.5
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 2.8e-40 169.5 335 32.2
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 2.8e-40 169.5 159 55.3
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 3.6e-40 169.1 165 52.1
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 4.7e-40 168.7 140 62.1
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.7e-40 168.7 140 62.1
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 4.7e-40 168.7 140 62.1
Zm00001eb337800 Zea mays HOM05D001374 ORTHO05D004296 4.7e-40 168.7 363 31.7
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 6.1e-40 168.3 165 52.1
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.4e-39 167.2 140 61.4
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 4.0e-39 165.6 140 60.7
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 8.9e-39 164.5 140 60.7
RcHm_v2.0_Chr1g0324801 Rosa chinensis HOM05D001374 ORTHO05D004296 1.2e-38 164.1 140 60.7
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 1.3e-37 160.6 324 34.0
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 1.4e-36 157.1 135 58.5
AT5G19720 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.5e-33 147.1 122 61.5
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.3e-33 145.6 123 57.7
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 1.6e-32 143.7 340 30.9
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 6.2e-32 141.7 136 55.9
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 8.9e-31 137.9 242 36.8
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 2.6e-30 136.3 143 50.3
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.9e-29 132.9 285 31.2
PRCOL_00001723 Prasinoderma coloniale HOM05D001374 ORTHO05D004296 6.4e-29 131.7 143 46.2
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 9.2e-28 127.9 74 75.7
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.2e-27 127.5 138 48.6
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.6e-27 127.1 138 47.8
Nn4g23889 Nelumbo nucifera HOM05D001374 ORTHO05D004296 2.7e-27 126.3 124 52.4
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 4.6e-27 125.6 271 31.0
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 1.5e-25 120.6 148 46.6
Lalb_Chr21g0308841 Lupinus albus HOM05D001374 ORTHO05D004296 2.8e-16 89.7 108 49.1
Potri.010G122932 Populus trichocarpa HOM05D001374 ORTHO05D004296 2.8e-16 89.7 51 84.3
CDE07G1238 Ceratophyllum demersum HOM05D001374 ORTHO05D004296 4.7e-16 89.0 80 56.2
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 1.9e-12 77.0 61 54.1
CARHR061010 Cardamine hirsuta HOM05D001374 ORTHO05D004296 9.2e-12 74.7 52 69.2
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 1.2e-11 74.3 51 60.8
C07p18550 Brassica napus HOM05D008960 ORTHO05D103607 1.6e-11 73.9 94 44.7
Atru.chr11.139 Acer truncatum HOM05D001374 ORTHO05D004296 1.0e-10 71.2 76 47.4
Haze_26608 Corylus avellana HOM05D001374 ORTHO05D004296 2.5e-09 66.6 51 52.9
MCO01G766 Micromonas commoda HOM05D001374 ORTHO05D004296 4.3e-09 65.9 54 51.9
AT1G68325 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 4.0e-07 59.3 44 63.6
BcaB03g14037 Brassica carinata HOM05D001374 ORTHO05D091843 1.2e-06 57.8 42 69.0


User provided reference genes

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