Gene: COL.COLO4_06769
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_06769
- Transcript Identifier COL.rna5583
- Gene Type Coding gene
- Location AWUE01012894.1 : 21810-29551 : negative
Gene Family Information
- ID HOM05D001374
- #Genes/#Species 455/100
- Phylogenetic origin
- ID ORTHO05D004296
- #Genes/#Species 184/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna5583
- GenBank OMP08113.1
- id gene6741
- gene_name COLO4_06769
- uniprot A0A1R3KM01
Descriptions
- Description Glutamyl/glutaminyl-tRNA synthetase, class Ib
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048481 | ISO | PLAZA Integrative Orthology | plant ovule development | AT1G25350 |
| GO:0009298 | ISO | PLAZA Homology (enrichment) | GDP-mannose biosynthetic process | HOM05D001374 |
| GO:0005975 | ISO | PLAZA Homology (enrichment) | carbohydrate metabolic process | HOM05D001374 |
| GO:0043039 | IEA | GOA Database | tRNA aminoacylation | |
| GO:0043039 | IEA | InterPro | tRNA aminoacylation | |
| GO:0006418 | IEA | GOA Database | tRNA aminoacylation for protein translation | |
| GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation | |
| GO:0006425 | IEA | GOA Database | glutaminyl-tRNA aminoacylation | |
| GO:0006425 | IEA | InterPro | glutaminyl-tRNA aminoacylation | |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004819 | IEA | GOA Database | glutamine-tRNA ligase activity | |
| GO:0004819 | IEA | InterPro | glutamine-tRNA ligase activity | |
| GO:0004476 | ISO | PLAZA Homology (enrichment) | mannose-6-phosphate isomerase activity | HOM05D001374 |
| GO:0008270 | ISO | PLAZA Homology (enrichment) | zinc ion binding | HOM05D001374 |
| GO:0004812 | IEA | GOA Database | aminoacyl-tRNA ligase activity | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0016874 | IEA | GOA Database | ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IEA | InterPro | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011035 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily |
| IPR007638 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 |
| IPR020056 | Ribosomal protein L25/Gln-tRNA synthetase, N-terminal |
| IPR007639 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal |
| IPR004514 | Glutamine-tRNA synthetase |
| IPR042559 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2 |
| IPR020058 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain |
| IPR042558 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1 |
| IPR020059 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| Mapman id | Description |
|---|---|
| 17.2.6 | Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamine-tRNA ligase |