Gene: AT1G25350
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G25350
- Transcript Identifier AT1G25350.1
- Gene Type Coding gene
- Location Chr1 : 8889280-8894205 : negative
Gene Family Information
- ID HOM05D001374
- #Genes/#Species 455/100
- Phylogenetic origin
- ID ORTHO05D004296
- #Genes/#Species 184/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G25350.1
- symbol OVA9
- full_name ovule abortion 9
- uniprot Q8W4F3
Descriptions
- Description glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS
- Computational description ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1); Has 13124 Blast hits to 13109 proteins in 2954 species: Archae - 262; Bacteria - 8524; Metazoa - 443; Fungi - 410; Plants - 177; Viruses - 0; Other Eukaryotes - 3308 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043039 | IEA | GOA Database | tRNA aminoacylation | |
| GO:0043039 | IEA | InterPro | tRNA aminoacylation | |
| GO:0006418 | IEA | GOA Database | tRNA aminoacylation for protein translation | |
| GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation | |
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006412 | TAS | Gene Ontology | translation | 1 |
| GO:0006412 | IEA | InterPro | translation | |
| GO:0006425 | IBA IEA | Gene Ontology | glutaminyl-tRNA aminoacylation | 2 |
| GO:0006425 | IEA | InterPro | glutaminyl-tRNA aminoacylation | |
| GO:0005975 | ISO | PLAZA Homology (enrichment) | carbohydrate metabolic process | HOM05D001374 |
| GO:0009298 | ISO | PLAZA Homology (enrichment) | GDP-mannose biosynthetic process | HOM05D001374 |
| GO:0006424 | ISS | Gene Ontology | glutamyl-tRNA aminoacylation | 3 |
| GO:0048481 | IMP | Gene Ontology | plant ovule development | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004819 | IEA | GOA Database | glutamine-tRNA ligase activity | |
| GO:0004819 | ISS, IBA | Gene Ontology | glutamine-tRNA ligase activity | 2 3 |
| GO:0004819 | IEA | InterPro | glutamine-tRNA ligase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004812 | IEA | GOA Database | aminoacyl-tRNA ligase activity | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0008270 | ISO | PLAZA Homology (enrichment) | zinc ion binding | HOM05D001374 |
| GO:0004476 | ISO | PLAZA Homology (enrichment) | mannose-6-phosphate isomerase activity | HOM05D001374 |
| GO:0016874 | IEA | GOA Database | ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005737 | IEA | InterPro | cytoplasm | |
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0005829 | ISS, IBA | Gene Ontology | cytosol | 2 3 |
| GO:0005634 | HDA | Gene Ontology | nucleus | 4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR020058 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain |
| IPR011035 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily |
| IPR042559 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2 |
| IPR007638 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2 |
| IPR020059 | Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain |
| IPR007639 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal |
| IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
| IPR020056 | Ribosomal protein L25/Gln-tRNA synthetase, N-terminal |
| IPR042558 | Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1 |
| IPR000924 | Glutamyl/glutaminyl-tRNA synthetase |
| IPR004514 | Glutamine-tRNA synthetase |
| Mapman id | Description |
|---|---|
| 17.2.6 | Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamine-tRNA ligase |