Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 8.8e-131 470.3 242 100.0
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 8.8e-131 470.3 242 100.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 3.4e-130 468.4 242 99.6
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.1e-128 463.4 242 98.8
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 5.5e-125 451.1 242 95.5
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.2e-124 449.9 242 94.2
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.7e-116 421.4 242 88.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.4e-114 415.2 242 88.0
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.8e-114 414.5 242 86.8
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.5e-114 414.1 242 87.2
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.7e-113 411.8 242 87.2
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.7e-111 405.6 242 85.1
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.1e-109 400.2 242 83.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-108 396.7 242 83.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-108 396.7 242 83.5
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.4e-107 393.3 242 81.8
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.7e-100 368.2 239 77.4
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.8e-99 366.3 241 77.6
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.4e-98 362.1 239 76.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 5.8e-98 361.3 239 76.2
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 9.9e-98 360.5 239 74.9
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.3e-97 360.1 239 77.0
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.3e-97 360.1 239 76.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.7e-97 359.8 239 75.3
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.9e-97 359.0 239 76.2
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.9e-97 359.0 232 77.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 4.9e-97 358.2 232 76.3
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 8.3e-97 357.5 239 74.9
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.1e-96 357.1 239 75.3
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-96 356.7 239 74.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.4e-96 356.7 239 75.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 3.2e-96 355.5 239 74.9
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 3.2e-96 355.5 239 74.5
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.1e-96 355.1 239 74.5
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.2e-95 353.6 239 75.3
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.2e-95 353.6 228 76.8
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.2e-95 353.6 239 74.1
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 2.7e-95 352.4 239 74.1
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 3.5e-95 352.1 239 74.5
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 4.6e-95 351.7 239 73.6
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 4.6e-95 351.7 238 73.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.0e-95 351.3 239 75.7
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.8e-95 350.9 239 71.5
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.8e-95 350.9 239 72.4
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.3e-94 350.1 239 73.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.0e-94 349.0 239 73.2
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 5.1e-94 348.2 239 72.0
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 6.6e-94 347.8 239 71.1
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 6.6e-94 347.8 239 74.1
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.5e-93 346.7 235 73.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.5e-93 346.7 239 72.8
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.5e-93 346.7 240 72.1
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 2.5e-93 345.9 239 72.4
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.3e-93 345.5 239 71.5
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 3.3e-93 345.5 236 72.5
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 4.3e-93 345.1 272 68.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.3e-93 345.1 239 74.1
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 4.3e-93 345.1 230 75.2
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 4.3e-93 345.1 236 72.5
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 5.6e-93 344.7 232 73.7
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 2.1e-92 342.8 239 72.0
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 2.8e-92 342.4 235 73.6
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.6e-92 342.0 236 72.5
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.6e-92 342.0 236 73.3
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 3.6e-92 342.0 240 72.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 4.7e-92 341.7 230 73.9
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.2e-92 341.3 235 74.5
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.1e-92 340.9 235 73.6
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.1e-91 340.5 233 72.1
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.4e-91 340.1 193 88.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.4e-91 340.1 231 74.0
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.4e-91 339.3 235 73.6
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.5e-90 336.7 242 76.0
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.5e-90 336.7 264 65.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.6e-90 335.9 233 70.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.4e-90 335.5 220 75.9
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 3.4e-90 335.5 240 69.6
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.4e-90 335.5 236 72.0
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.4e-90 335.1 232 72.8
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 4.4e-90 335.1 236 71.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 5.8e-90 334.7 226 71.7
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.3e-89 333.6 240 69.6
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.7e-89 333.2 211 80.6
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.2e-89 332.8 232 72.0
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 8.4e-89 330.9 258 65.9
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.9e-88 329.7 211 79.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.6e-87 326.6 234 68.8
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 6.0e-87 324.7 230 68.7
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.8e-87 324.3 239 69.5
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.9e-85 319.7 239 68.6
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-85 319.7 339 53.4
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.9e-85 319.7 202 78.7
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.9e-85 319.7 239 68.2
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.5e-85 319.3 235 66.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 3.3e-85 318.9 233 69.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.2e-84 314.7 290 59.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.4e-83 312.8 239 66.1
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 4.0e-83 312.0 202 77.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 6.9e-83 311.2 213 74.6
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.2e-82 310.5 285 58.6
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.4e-82 308.9 214 73.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.3e-81 307.0 236 65.3
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.4e-80 303.5 196 76.0
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 5.6e-77 291.6 197 72.6
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 7.3e-77 291.2 241 63.9
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.1e-75 287.3 232 65.9
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.1e-75 287.3 201 71.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.1e-72 274.6 167 82.0
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 6.2e-68 261.5 234 58.5
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 9.0e-67 257.7 152 84.9
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.6e-66 256.1 225 56.4
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 2.5e-64 249.6 176 69.3
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 2.5e-64 249.6 223 56.1
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 6.0e-63 245.0 171 71.9
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 8.7e-54 214.5 145 73.8
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.2e-48 194.9 139 69.1
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.2e-48 194.9 139 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.6e-47 193.7 186 52.7
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 4.6e-47 192.2 133 71.4
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 3.3e-45 186.0 227 43.2
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.3e-45 185.7 125 73.6
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 9.7e-45 184.5 119 78.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.8e-44 183.0 131 68.7
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 6.3e-44 181.8 182 55.5
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-43 181.0 119 78.2
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 3.1e-43 179.5 125 68.8
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.3e-43 178.7 119 76.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.2e-41 173.3 168 56.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 3.2e-40 169.5 233 43.3
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 4.7e-39 165.6 118 69.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.5e-33 145.2 127 63.8
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 3.6e-31 139.4 119 62.2
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 3.0e-30 136.3 118 61.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.6e-29 133.3 99 67.7
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.4e-27 126.7 184 43.5
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.1e-27 126.3 111 61.3
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 2.7e-26 123.2 84 69.0
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 6.1e-23 112.1 239 33.9
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.8e-22 110.5 150 37.3
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.8e-22 110.5 80 67.5
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.8e-22 108.6 102 62.7
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 9.8e-21 104.8 81 64.2
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.2e-20 103.6 70 74.3
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 8.3e-20 101.7 89 56.2
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.7e-18 95.1 106 50.0
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 4.2e-16 89.4 183 30.1
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.1e-15 85.5 71 63.4
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 9.8e-13 78.2 51 70.6
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-09 67.0 45 68.9
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 6.6e-09 65.5 162 33.3
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 5.2e-06 55.8 39 66.7


User provided reference genes

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