Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1454.1 754 100.0
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 0.0e+00 1394.4 753 97.1
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 0.0e+00 1378.6 749 97.1
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 0.0e+00 1375.1 749 96.8
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1365.5 732 97.7
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 0.0e+00 1258.8 731 89.9
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 0.0e+00 1181.0 731 83.6
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 0.0e+00 1169.1 733 83.1
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 0.0e+00 1164.8 733 83.2
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 0.0e+00 1157.1 734 82.4
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 0.0e+00 1152.1 735 81.8
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 0.0e+00 1118.6 737 80.3
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 0.0e+00 1083.6 743 77.1
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 2.6e-269 932.2 741 67.9
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.2e-218 763.8 656 60.7
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.1e-214 749.2 740 55.5
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 3.2e-211 739.2 650 59.5
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 4.2e-211 738.8 704 57.0
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.6e-210 736.9 731 55.5
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 5.1e-209 731.9 704 56.5
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 2.5e-208 729.6 656 58.4
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 8.1e-207 724.5 713 54.6
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 2.4e-206 723.0 745 53.3
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 6.9e-206 721.5 713 54.3
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 5.8e-205 718.4 767 52.8
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.1e-203 714.1 718 53.9
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 5.4e-203 711.8 754 52.0
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 9.3e-203 711.1 716 52.1
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 2.3e-201 706.4 712 52.8
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 6.2e-199 698.4 647 55.5
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 1.1e-198 697.6 691 53.5
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.4e-198 697.2 653 56.4
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 1.3e-196 690.6 725 50.3
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.2e-194 684.1 692 52.9
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.2e-194 684.1 719 52.0
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 7.9e-194 681.4 717 51.0
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.0e-193 681.0 726 51.2
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 6.7e-193 678.3 664 53.8
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.1e-192 677.6 663 55.1
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 1.1e-192 677.6 739 50.7
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 1.9e-192 676.8 667 55.0
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 3.3e-192 676.0 733 49.8
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.6e-191 673.7 692 52.6
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.6e-191 673.7 702 52.6
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.8e-191 672.2 722 51.0
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.4e-190 670.6 692 52.0
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.2e-189 667.5 719 52.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 2.0e-189 666.8 724 51.2
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 5.8e-189 665.2 738 49.3
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 1.7e-188 663.7 769 48.9
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 8.4e-188 661.4 733 48.8
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 9.3e-187 657.9 753 49.4
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 9.3e-187 657.9 729 50.2
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 2.1e-186 656.8 615 55.4
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 2.1e-186 656.8 604 56.0
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.0e-185 654.4 826 46.1
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 1.0e-185 654.4 724 48.2
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.5e-184 649.8 675 51.6
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.6e-183 647.1 755 50.3
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 3.7e-183 646.0 710 50.7
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 8.2e-183 644.8 689 50.2
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 4.0e-182 642.5 720 49.6
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 4.0e-182 642.5 711 51.1
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.5e-181 640.6 741 47.8
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 3.4e-181 639.4 688 50.9
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.3e-180 637.5 694 50.4
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.3e-180 637.5 664 50.8
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.5e-180 635.2 661 50.8
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 3.2e-179 632.9 747 47.4
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 4.2e-179 632.5 736 49.3
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 4.2e-179 632.5 643 51.6
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 2.1e-178 630.2 712 48.9
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 4.6e-178 629.0 686 49.6
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 6.7e-177 625.2 711 50.2
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.5e-176 624.0 666 50.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 3.3e-176 622.9 701 50.2
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 2.2e-175 620.2 721 49.4
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 2.8e-175 619.8 698 50.4
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 6.3e-175 618.6 700 50.6
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 6.3e-175 618.6 709 49.1
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 3.1e-174 616.3 733 49.1
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 1.2e-173 614.4 672 49.7
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.2e-172 610.1 656 51.4
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 1.1e-171 607.8 635 50.6
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 4.2e-171 605.9 714 48.2
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 1.4e-169 600.9 612 50.3
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 3.3e-168 596.3 582 52.9
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 2.2e-167 593.6 724 46.0
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 3.1e-166 589.7 659 49.0
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 2.5e-163 580.1 675 48.6
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 7.9e-162 575.1 1070 36.4
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 5.7e-160 568.9 577 51.1
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.2e-154 551.2 696 44.5
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 3.3e-152 543.1 613 48.3
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.3e-143 514.6 642 45.8
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 3.5e-141 506.5 718 42.8
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.0e-136 490.7 695 43.7
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.6e-133 481.1 472 52.5
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.5e-117 426.8 663 42.1
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.1e-102 378.6 696 36.8
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 6.6e-100 369.4 324 59.0
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.7e-95 354.8 670 34.8
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 2.4e-94 350.9 300 61.0
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 7.8e-93 345.9 619 36.3
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 3.9e-92 343.6 386 47.9
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 1.8e-89 334.7 688 33.0
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 3.5e-77 293.9 275 56.4
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 1.1e-75 288.9 572 33.4
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 2.3e-68 264.6 604 33.4
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.0e-63 249.2 393 41.0
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.8e-63 247.3 647 30.8
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 5.5e-54 216.9 591 28.8
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 3.3e-51 207.6 271 45.4
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 6.1e-45 186.8 631 26.1
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 8.5e-39 166.4 732 24.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 8.0e-29 133.3 656 25.2
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 2.6e-27 128.3 453 25.6
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 9.8e-27 126.3 181 43.1
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 6.3e-26 123.6 227 39.2
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 9.4e-22 109.8 92 65.2
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 1.2e-21 109.4 74 77.0
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.8e-20 105.5 162 39.5
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.4e-17 95.1 145 40.7
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.7e-15 89.0 124 46.0
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 3.6e-13 81.3 691 21.4
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 4.0e-12 77.8 112 41.1
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.0e-07 63.2 73 38.4
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 5.0e-07 60.8 111 36.9
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 2.5e-06 58.5 126 33.3
AT1G22240 Arabidopsis thaliana HOM05D000867 ORTHO05D000864 4.3e-06 57.8 282 23.0
Lj1A522T65 Lonicera japonica HOM05D000867 ORTHO05D000864 7.3e-06 57.0 294 23.1
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 9.5e-06 56.6 68 42.6


User provided reference genes

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