Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 3.6e-123 444.9 221 100.0
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 9.3e-119 430.3 216 99.1
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 3.0e-117 425.2 221 93.7
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 3.0e-117 425.2 221 93.7
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.5e-116 422.2 221 93.2
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 4.9e-112 407.9 216 91.7
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 8.1e-107 390.6 221 85.5
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.5e-105 386.3 221 84.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.1e-103 377.5 221 82.4
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.1e-102 375.9 221 82.4
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.5e-100 369.8 221 80.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 3.1e-98 362.1 221 77.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.5e-95 351.3 221 74.7
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.7e-93 344.4 215 76.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 9.0e-90 334.0 221 74.2
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 4.5e-89 331.6 213 71.8
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.0e-88 330.5 221 70.6
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.3e-88 330.1 215 73.0
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.2e-88 329.3 213 73.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.9e-88 328.9 215 71.2
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.4e-88 327.4 215 70.2
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.4e-88 327.4 235 67.2
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.4e-87 326.6 215 71.2
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-87 326.6 215 69.8
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.4e-87 326.6 215 69.8
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.9e-87 326.2 215 71.2
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.2e-87 325.1 215 70.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.7e-86 322.4 215 67.9
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 7.9e-86 320.9 216 69.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.0e-85 320.5 215 69.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.0e-85 320.5 215 67.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.0e-85 320.5 215 67.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.0e-85 318.9 215 67.4
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.0e-85 318.9 215 68.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.9e-85 318.5 217 68.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 5.1e-85 318.2 217 67.7
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.1e-84 317.0 217 69.6
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-84 317.0 223 66.8
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-84 317.0 215 67.4
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.9e-84 316.2 215 68.8
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.9e-84 316.2 220 65.9
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.6e-83 313.2 218 67.4
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.8e-83 312.4 215 65.6
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.8e-83 311.6 220 65.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.3e-83 311.2 215 65.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 6.3e-83 311.2 215 66.5
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.4e-82 310.1 220 65.5
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.8e-82 309.7 216 68.5
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.8e-82 309.7 217 65.4
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.1e-82 308.9 215 65.6
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 5.3e-82 308.1 223 67.3
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.3e-82 308.1 216 67.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 6.9e-82 307.8 216 68.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.2e-81 307.0 215 66.5
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-81 306.6 216 66.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.0e-81 306.2 241 62.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 3.4e-81 305.4 215 65.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.4e-81 305.4 215 65.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 4.5e-81 305.1 216 66.2
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 7.7e-81 304.3 215 65.6
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 7.7e-81 304.3 213 63.8
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 5.0e-80 301.6 221 68.3
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 6.5e-80 301.2 252 59.1
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 6.5e-80 301.2 252 59.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 8.5e-80 300.8 215 64.7
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.4e-79 300.1 215 66.5
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.9e-79 299.7 215 64.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.5e-79 299.3 217 64.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.2e-79 298.9 216 65.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.2e-79 298.5 234 63.2
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.5e-79 298.1 219 65.3
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.6e-78 295.0 216 64.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.0e-77 293.9 215 61.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.3e-77 292.7 215 60.9
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 5.1e-77 291.6 214 60.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 8.8e-77 290.8 262 54.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.1e-76 290.4 215 65.6
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.1e-76 290.4 215 60.5
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.4e-76 287.7 215 61.9
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.7e-75 286.6 210 63.3
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.7e-75 285.4 215 60.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.7e-75 285.4 216 61.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 6.3e-75 284.6 215 61.4
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-74 283.5 209 66.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.8e-74 283.1 215 61.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 9.1e-74 280.8 215 58.6
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.0e-73 279.6 215 59.1
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 4.5e-73 278.5 215 58.1
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.7e-73 277.7 213 58.2
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-72 276.2 215 57.7
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-72 276.2 215 57.7
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-72 276.2 215 57.7
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.9e-72 275.8 217 59.4
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.8e-72 275.4 244 54.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 5.0e-72 275.0 215 58.6
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 6.5e-72 274.6 215 58.1
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 6.5e-72 274.6 202 61.4
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.1e-71 273.9 194 64.4
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.1e-71 273.9 217 59.0
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.2e-70 270.4 216 56.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-68 262.3 215 57.7
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.1e-66 255.8 178 64.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.0e-65 253.1 226 50.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-65 252.3 215 55.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 4.5e-65 251.9 215 58.1
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.1e-63 247.3 219 49.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.3e-60 235.7 160 69.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.3e-59 233.8 213 48.4
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.1e-58 228.8 215 52.1
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.0e-57 226.5 162 66.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.5e-57 225.7 168 63.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 7.7e-57 224.6 212 48.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.0e-56 221.9 185 56.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-55 219.9 181 57.5
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 3.2e-55 219.2 141 69.5
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-54 215.7 221 48.9
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.4e-53 213.8 188 56.9
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-53 213.8 141 69.5
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.3e-53 213.0 215 50.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.0e-53 212.6 167 59.9
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.6e-52 209.5 159 63.5
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.6e-52 209.5 159 63.5
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.4e-52 209.1 170 57.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.7e-51 206.8 212 44.3
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.8e-51 206.1 142 66.2
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-51 206.1 214 48.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.7e-51 205.7 211 46.4
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-48 197.2 203 45.8
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.8e-48 195.7 171 57.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 6.5e-48 194.9 159 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 4.2e-47 192.2 187 48.1
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-45 187.2 168 54.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 4.0e-45 185.7 218 36.7
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-43 180.6 143 57.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 5.9e-41 171.8 149 57.0
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 7.7e-41 171.4 124 66.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-39 167.5 133 60.9
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-39 166.8 203 43.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-39 165.2 166 50.6
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.5e-36 154.8 123 60.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.9e-35 152.1 133 56.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.4e-35 151.8 117 65.8
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-33 147.1 123 58.5
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.0e-32 144.4 155 49.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.6e-32 141.7 133 52.6
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-29 134.0 117 55.6
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-27 127.1 101 60.4
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-22 108.2 91 58.2
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.1e-21 106.3 66 78.8
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-20 103.6 143 39.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.9e-18 97.1 58 69.0
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.1e-17 93.6 73 60.3
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 5.1e-16 89.0 66 57.6
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-14 84.3 73 53.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.8e-14 83.2 73 58.9
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 4.0e-13 79.3 52 59.6
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 8.9e-13 78.2 54 75.9
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 8.9e-13 78.2 54 75.9
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 9.9e-12 74.7 53 73.6
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.9e-10 70.5 162 27.8
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-10 68.9 106 38.7
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 2.5e-07 60.1 97 34.0


User provided reference genes

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