Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 2.0e-118 429.1 218 100.0
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 4.2e-116 421.4 218 99.1
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 7.5e-113 410.6 218 96.8
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 2.2e-112 409.1 218 96.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.1e-111 406.8 218 95.9
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 6.4e-96 354.4 231 81.4
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 6.0e-94 347.8 229 80.8
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.3e-92 341.7 228 80.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 6.8e-90 334.3 199 85.4
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.6e-89 332.4 228 78.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 4.1e-87 325.1 228 77.6
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.2e-78 297.0 214 76.2
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.0e-77 293.9 257 64.2
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-74 283.1 238 62.6
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 8.9e-74 280.8 238 62.2
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.2e-73 280.4 238 62.6
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 2.0e-73 279.6 238 60.9
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.4e-73 278.5 238 62.2
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.3e-72 276.9 238 62.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.4e-71 273.5 240 60.8
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.2e-71 271.9 238 61.3
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.0e-69 267.3 240 59.2
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.3e-69 266.9 232 59.9
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.7e-69 266.5 219 63.9
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.3e-69 266.2 240 60.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 3.0e-69 265.8 237 60.8
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 5.1e-69 265.0 243 59.7
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 6.6e-69 264.6 242 60.3
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.5e-68 263.5 237 57.8
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.9e-68 263.1 235 60.9
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.9e-68 263.1 235 60.9
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.9e-68 263.1 232 60.3
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.9e-68 263.1 232 61.2
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.3e-68 262.3 232 59.5
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 4.3e-68 261.9 232 60.8
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 5.6e-68 261.5 236 58.9
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 5.6e-68 261.5 240 58.8
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 7.3e-68 261.2 240 60.0
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 9.6e-68 260.8 240 57.1
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.3e-67 260.4 240 58.8
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 1.6e-67 260.0 239 59.0
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.6e-67 260.0 236 58.1
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.8e-67 259.2 232 59.9
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 6.2e-67 258.1 241 58.1
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.8e-66 256.5 240 58.3
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.3e-66 255.0 240 58.3
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.3e-66 255.0 240 59.2
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.5e-65 253.4 228 58.3
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.0e-65 253.1 238 60.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.0e-65 253.1 237 58.2
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 2.0e-65 253.1 235 57.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.6e-65 252.7 239 56.9
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.5e-65 251.9 232 59.5
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 4.5e-65 251.9 233 58.4
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 9.9e-65 250.8 218 59.6
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 9.9e-65 250.8 227 58.1
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 9.9e-65 250.8 242 56.6
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 9.9e-65 250.8 242 57.0
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.8e-64 248.8 200 64.0
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 6.4e-64 248.1 240 55.8
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 6.4e-64 248.1 223 58.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.1e-63 247.3 240 55.8
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.2e-63 245.7 205 62.9
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 7.1e-63 244.6 219 58.4
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 9.3e-63 244.2 227 57.3
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.1e-62 243.0 235 57.4
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.1e-62 243.0 242 56.2
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 2.7e-62 242.7 232 56.9
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 6.0e-62 241.5 242 56.2
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 6.0e-62 241.5 239 54.8
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 7.9e-62 241.1 240 54.2
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.0e-61 240.7 242 55.4
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.3e-61 240.4 221 59.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.3e-61 239.6 241 55.6
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 3.9e-61 238.8 197 62.4
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 2.5e-60 236.1 238 53.4
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 4.8e-59 231.9 154 76.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.8e-58 229.9 281 50.2
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 3.1e-58 229.2 233 54.5
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.2e-57 227.3 237 54.4
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 2.0e-57 226.5 217 55.3
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.0e-57 226.5 244 52.5
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.2e-56 223.0 190 69.5
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.9e-56 222.6 222 55.4
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 6.4e-56 221.5 178 60.1
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 6.4e-56 221.5 198 57.1
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 6.4e-56 221.5 228 53.5
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 3.2e-55 219.2 200 56.0
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.2e-54 217.2 227 52.9
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.7e-54 216.1 206 58.3
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.3e-53 213.8 131 74.0
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.7e-53 211.1 220 55.5
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 9.6e-52 207.6 131 71.8
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.8e-51 206.1 238 51.7
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 4.5e-49 198.7 196 54.1
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 5.8e-49 198.4 122 77.0
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 1.7e-48 196.8 212 51.9
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.7e-48 196.8 266 45.9
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.9e-48 196.1 238 50.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.2e-47 192.2 228 48.7
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.1e-47 191.4 238 51.3
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.0e-45 187.6 197 53.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.8e-45 186.8 251 47.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.1e-44 184.1 223 46.6
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.5e-44 183.0 244 47.5
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 4.1e-42 175.6 262 42.7
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.0e-40 168.7 178 52.2
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 6.5e-40 168.3 105 69.5
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.4e-39 167.2 252 43.7
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.5e-39 166.4 216 47.7
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.2e-38 164.1 188 52.1
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 7.9e-38 161.4 188 51.6
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.0e-37 161.0 187 49.7
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 3.9e-37 159.1 220 44.5
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 8.7e-37 157.9 180 51.1
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 7.4e-36 154.8 192 50.0
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.6e-33 146.4 171 49.7
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.7e-27 127.1 79 74.7
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 2.9e-24 116.3 64 92.2
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 4.2e-23 112.5 70 77.1
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.4e-23 111.3 57 80.7
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 7.9e-22 108.2 165 42.4
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 8.2e-19 98.2 128 46.1
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 7.0e-18 95.1 67 59.7
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 5.5e-15 85.5 68 60.3
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 5.5e-15 85.5 49 77.6
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 4.7e-14 82.4 57 70.2
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.5e-12 77.4 83 54.2
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 5.7e-12 75.5 50 62.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 2.8e-11 73.2 48 72.9
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.3e-11 72.0 48 72.9
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.2e-11 71.6 48 72.9
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.8e-10 70.5 48 70.8
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 2.4e-10 70.1 78 51.3
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-08 64.7 61 55.7
C04p56940 Brassica napus HOM05D057202 ORTHO05D041615 1.3e-08 64.3 61 62.3
BolC4t27231H Brassica oleracea HOM05D057202 ORTHO05D041615 1.3e-08 64.3 61 62.3
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.9e-08 63.2 62 53.2
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.6e-06 57.4 42 59.5


User provided reference genes

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