Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p09770 Brassica napus HOM05D012846 ORTHO05D016740 5.3e-142 507.7 259 100.0
BolC3t18653H Brassica oleracea HOM05D012846 ORTHO05D016740 5.6e-115 417.9 288 81.6
BraA09t40262Z Brassica rapa HOM05D012846 ORTHO05D016740 1.3e-84 317.0 287 65.5
BcaC04g18815 Brassica carinata HOM05D012846 ORTHO05D016740 1.7e-84 316.6 282 68.8
C08p20140 Brassica napus HOM05D012846 ORTHO05D016740 8.7e-84 314.3 282 67.7
BcaC01g02515 Brassica carinata HOM05D012846 ORTHO05D039543 2.8e-82 309.3 286 66.4
C03p63990 Brassica napus HOM05D012846 ORTHO05D039543 1.5e-80 303.5 280 65.0
A09p16510 Brassica napus HOM05D012846 ORTHO05D016740 3.4e-80 302.4 292 65.1
BcaC05g28589 Brassica carinata HOM05D012846 ORTHO05D016740 6.9e-65 251.5 165 83.0
C05p46950 Brassica napus HOM05D012846 ORTHO05D016740 2.9e-63 246.1 280 57.5
BolC5t33424H Brassica oleracea HOM05D012846 ORTHO05D016740 7.7e-48 194.9 157 71.3
BolC5t33425H Brassica oleracea HOM05D012846 ORTHO05D016740 6.3e-18 95.5 77 71.4
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 7.0e-09 65.5 148 33.8
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 9.2e-09 65.1 43 81.4
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 1.2e-08 64.7 33 97.0
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.2e-08 64.7 33 97.0
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.6e-08 64.3 137 37.2
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 1.6e-08 64.3 158 34.8
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 2.0e-08 63.9 82 47.6
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 2.0e-08 63.9 158 35.4
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 2.7e-08 63.5 43 79.1
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 2.7e-08 63.5 43 79.1
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 2.7e-08 63.5 43 79.1
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 4.5e-08 62.8 66 53.0
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 5.9e-08 62.4 32 96.9
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 5.9e-08 62.4 32 96.9
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 5.9e-08 62.4 32 96.9
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 7.8e-08 62.0 33 93.9
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 7.8e-08 62.0 148 32.4
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 7.8e-08 62.0 131 39.7
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 7.8e-08 62.0 95 46.3
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 1.0e-07 61.6 33 90.9
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 1.0e-07 61.6 32 96.9
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 1.0e-07 61.6 32 96.9
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 1.0e-07 61.6 106 41.5
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.0e-07 61.6 35 85.7
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.0e-07 61.6 41 75.6
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 1.3e-07 61.2 129 41.9
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 1.3e-07 61.2 62 56.5
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.3e-07 61.2 106 39.6
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 1.7e-07 60.8 33 87.9
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 2.3e-07 60.5 166 33.1
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 2.3e-07 60.5 81 44.4
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 2.3e-07 60.5 127 37.8
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 2.3e-07 60.5 139 35.3
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 2.9e-07 60.1 117 35.9
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 2.9e-07 60.1 75 49.3
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 2.9e-07 60.1 107 41.1
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 3.9e-07 59.7 170 31.8
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 3.9e-07 59.7 72 51.4
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 5.0e-07 59.3 86 41.9
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 6.6e-07 58.9 86 46.5
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 6.6e-07 58.9 56 60.7
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 6.6e-07 58.9 82 47.6
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 6.6e-07 58.9 116 35.3
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 8.6e-07 58.5 90 43.3
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 8.6e-07 58.5 81 45.7
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 8.6e-07 58.5 122 35.2
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 8.6e-07 58.5 41 73.2
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 8.6e-07 58.5 41 73.2
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 8.6e-07 58.5 41 73.2
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.1e-06 58.2 91 44.0
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.1e-06 58.2 148 31.8
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.1e-06 58.2 148 31.8
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 1.1e-06 58.2 33 84.8
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 1.1e-06 58.2 33 84.8
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 1.1e-06 58.2 41 73.2
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.1e-06 58.2 41 73.2
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.1e-06 58.2 41 73.2
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 1.5e-06 57.8 41 70.7
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 1.5e-06 57.8 41 70.7
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 1.5e-06 57.8 41 70.7
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.5e-06 57.8 41 70.7
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.5e-06 57.8 91 45.1
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.5e-06 57.8 91 45.1
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 1.5e-06 57.8 51 62.7
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 1.5e-06 57.8 51 62.7
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 1.5e-06 57.8 62 53.2
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 1.5e-06 57.8 41 70.7
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 1.5e-06 57.8 62 53.2
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.9e-06 57.4 41 70.7
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.9e-06 57.4 33 81.8
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 1.9e-06 57.4 36 77.8
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.9e-06 57.4 101 39.6
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.9e-06 57.4 41 70.7
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 1.9e-06 57.4 41 70.7
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.9e-06 57.4 61 52.5
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 1.9e-06 57.4 41 70.7
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 2.5e-06 57.0 42 73.8
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.5e-06 57.0 101 39.6
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 2.5e-06 57.0 33 81.8
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 3.3e-06 56.6 71 46.5
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 3.3e-06 56.6 41 70.7
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.3e-06 56.6 91 44.0
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 4.3e-06 56.2 41 70.7
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 5.6e-06 55.8 82 41.5
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 7.3e-06 55.5 33 78.8
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 7.3e-06 55.5 33 78.8
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 7.3e-06 55.5 74 45.9
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 7.3e-06 55.5 33 81.8
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 9.5e-06 55.1 51 58.8
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 9.5e-06 55.1 41 70.7
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 9.5e-06 55.1 43 65.1
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.5e-06 55.1 43 65.1
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.5e-06 55.1 101 38.6
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 9.5e-06 55.1 60 51.7


User provided reference genes

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