Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2631.3 1363 100.0
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2545.0 1329 99.5
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2520.3 1333 98.0
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2518.0 1333 98.0
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2493.4 1333 97.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2464.1 1333 96.1
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2377.4 1335 92.6
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2372.8 1337 91.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2371.7 1336 92.5
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2368.6 1335 92.4
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2367.0 1338 92.1
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2365.9 1337 92.1
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2355.5 1335 91.9
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2343.5 1338 91.3
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2332.4 1341 90.2
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2310.0 1342 89.9
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2280.4 1339 88.5
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2278.4 1345 88.7
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2091.6 1309 83.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2069.3 1350 80.7
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1932.5 1373 73.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1925.6 1373 73.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1922.5 1373 73.4
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1913.7 1369 73.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1906.3 1372 73.2
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1902.1 1375 73.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1900.6 1375 72.7
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1895.2 1373 73.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1873.6 1371 71.6
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1870.1 1373 72.0
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1869.0 1373 71.3
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1867.8 1377 71.5
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1861.3 1376 71.1
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1859.3 1374 71.2
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1858.6 1367 71.2
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1858.2 1375 71.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1852.4 1365 70.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1850.9 1371 71.0
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1845.5 1358 71.1
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1844.7 1366 70.6
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1841.6 1366 71.0
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1836.2 1366 70.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1835.8 1365 71.0
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1835.5 1366 70.2
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1835.1 1366 70.5
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1832.8 1358 71.3
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1831.2 1366 70.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1828.9 1361 70.5
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1828.5 1365 70.6
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1826.2 1372 70.0
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1825.8 1314 73.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1824.3 1393 69.2
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1823.9 1362 69.8
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1822.4 1371 69.8
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1821.2 1365 70.2
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1820.8 1365 69.8
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1805.8 1366 69.3
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1803.5 1366 69.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1803.1 1366 69.2
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1801.2 1366 69.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1799.6 1314 72.1
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1798.5 1363 69.5
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1793.9 1368 68.9
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1793.9 1366 69.0
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1790.8 1361 69.1
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1784.6 1400 67.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1783.8 1310 71.6
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1783.5 1361 68.8
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1780.4 1370 68.1
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1778.5 1367 68.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1776.1 1364 68.8
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1775.4 1377 68.3
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1774.2 1387 67.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1772.3 1367 68.5
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1767.3 1358 68.4
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1758.8 1358 67.7
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1758.8 1363 67.7
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1752.6 1365 67.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1751.5 1371 67.2
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1747.6 1371 68.0
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1746.9 1367 67.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1738.4 1419 65.3
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1738.0 1372 67.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1728.8 1359 66.7
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1727.2 1347 67.7
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1717.6 1365 66.9
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1713.7 1360 65.8
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1712.6 1367 66.0
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1707.2 1358 66.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1704.1 1358 66.7
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1700.3 1307 68.5
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1692.9 1370 65.3
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1678.7 1343 66.0
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1678.7 1387 66.6
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1675.2 1371 65.7
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1661.0 1379 64.6
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1649.0 1379 64.0
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1642.1 1345 64.8
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1578.9 1349 62.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1554.3 1387 62.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1548.1 1149 70.8
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1513.4 1362 59.7
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1504.6 1352 60.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1496.1 1362 58.3
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1476.1 1366 59.7
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1474.9 1078 71.7
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1322.4 1391 53.0
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1315.8 1403 53.6
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1297.3 1093 65.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1259.6 858 75.4
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1243.4 1255 56.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1215.3 1351 52.3
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1164.1 1351 51.1
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1115.5 1080 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1083.9 1162 52.8
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 3.0e-300 1035.8 1105 55.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.3e-287 993.8 747 72.4
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.5e-270 935.3 827 59.5
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.6e-248 863.2 770 61.2
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.3e-228 797.0 715 61.0
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 9.1e-225 785.0 903 51.8
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 6.3e-218 762.3 593 66.8
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.3e-207 727.2 747 56.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-188 664.8 597 60.8
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 8.9e-188 662.1 449 78.2
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.2e-162 577.8 448 65.6
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.3e-151 542.0 446 67.9
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.6e-149 535.0 474 64.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.7e-136 491.1 476 56.1
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 5.7e-134 483.4 543 52.5
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.2e-118 432.6 654 41.3
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.0e-114 419.5 748 39.7
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.9e-93 348.2 232 72.8
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.9e-93 347.4 230 79.1
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.8e-80 305.1 295 57.3
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.3e-77 296.2 224 69.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.8e-75 287.0 396 46.0
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.2e-69 268.9 235 60.4
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 4.9e-69 267.7 1747 23.1
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.1e-68 266.5 238 62.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.9e-68 265.8 1230 26.4
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 7.6e-62 243.8 267 52.8
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 4.9e-61 241.1 1499 23.9
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 7.8e-59 233.8 205 59.0
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.8e-40 171.4 336 38.4
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 6.9e-39 167.5 186 51.1
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 7.1e-36 157.5 190 49.5
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 5.1e-34 151.4 130 60.0
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.1e-31 143.7 225 45.8
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 1.9e-28 132.9 1043 22.7
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 3.3e-25 122.1 131 51.1
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 6.3e-24 117.9 101 64.4
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.4e-20 106.7 127 51.2
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-15 90.5 110 52.7
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.0e-13 84.0 82 57.3
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 8.5e-13 80.9 69 58.0
BolC5t30030H Brassica oleracea HOM05D001486 ORTHO05D105415 3.5e-06 58.9 29 93.1
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 7.7e-06 57.8 65 46.2
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.7e-06 57.8 135 28.9


User provided reference genes

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