Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p07840 Brassica napus HOM05D001948 ORTHO05D001873 3.0e-190 668.3 328 100.0
BraA05t19751Z Brassica rapa HOM05D001948 ORTHO05D001873 6.5e-177 624.0 330 93.3
A05p07850 Brassica napus HOM05D001948 ORTHO05D001873 7.7e-162 573.9 330 88.5
A05p07830 Brassica napus HOM05D001948 ORTHO05D001873 1.6e-127 459.9 332 72.6
C04p09490 Brassica napus HOM05D001948 ORTHO05D001873 2.2e-116 422.9 320 70.3
BolC4t22555H Brassica oleracea HOM05D001948 ORTHO05D001873 1.1e-107 394.0 322 65.8
BcaB02g09215 Brassica carinata HOM05D001948 ORTHO05D001873 2.1e-106 389.8 319 67.4
BcaB02g09214 Brassica carinata HOM05D001948 ORTHO05D001873 2.9e-100 369.4 310 63.5
A03p21080 Brassica napus HOM05D001948 ORTHO05D001873 1.9e-80 303.5 329 53.2
C03p24900 Brassica napus HOM05D001948 ORTHO05D001873 7.4e-80 301.6 329 53.2
BolC3t14881H Brassica oleracea HOM05D001948 ORTHO05D001873 1.6e-79 300.4 342 51.8
Sp4g20510 Schrenkiella parvula HOM05D001948 ORTHO05D001873 1.6e-79 300.4 320 52.8
BcaC01g05563 Brassica carinata HOM05D001948 ORTHO05D001873 3.1e-78 296.2 329 53.2
BcaB01g03724 Brassica carinata HOM05D001948 ORTHO05D001873 1.7e-76 290.4 325 51.1
AT2G38185 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 5.7e-72 275.4 312 50.0
BraA03t11349Z Brassica rapa HOM05D001948 ORTHO05D001873 6.3e-71 271.9 340 48.5
Thhalv10017777m.g Eutrema salsugineum HOM05D001948 ORTHO05D001873 6.5e-68 261.9 315 50.2
AL4G35210 Arabidopsis lyrata HOM05D001948 ORTHO05D001873 4.2e-67 259.2 312 48.7
Aa31LG5G23750 Aethionema arabicum HOM05D001948 ORTHO05D001873 1.8e-62 243.8 318 44.3
Thhalv10016735m.g Eutrema salsugineum HOM05D001948 ORTHO05D001873 1.0e-57 228.0 317 44.8
AT2G38220 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 3.3e-56 223.0 311 43.4
AL4G35220 Arabidopsis lyrata HOM05D001948 ORTHO05D001873 2.8e-55 219.9 296 43.9
Carub.0004s2017 Capsella rubella HOM05D001948 ORTHO05D001873 1.1e-54 218.0 282 47.5
CARHR132790 Cardamine hirsuta HOM05D001948 ORTHO05D001873 1.8e-54 217.2 295 44.1
CARHR132810 Cardamine hirsuta HOM05D001948 ORTHO05D001873 8.5e-52 208.4 314 41.7
Carub.0004s2018 Capsella rubella HOM05D001948 ORTHO05D001873 2.5e-51 206.8 336 40.8
AT2G38195 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 5.3e-46 189.1 248 44.8
C04p09500 Brassica napus HOM05D001948 ORTHO05D031989 1.7e-44 184.1 140 70.0
THA.LOC104807018 Tarenaya hassleriana HOM05D001948 ORTHO05D001873 1.7e-44 184.1 292 40.1
BcaC02g11962 Brassica carinata HOM05D001948 ORTHO05D031989 3.8e-44 183.0 214 50.0
CARHR132800 Cardamine hirsuta HOM05D001948 ORTHO05D001873 9.7e-40 168.3 295 39.7
Thecc.05G015900 Theobroma cacao HOM05D001948 ORTHO05D001873 1.7e-39 167.5 324 35.2
BcaC02g11958 Brassica carinata HOM05D001948 ORTHO05D001873 1.8e-38 164.1 87 89.7
BolC4t22556H Brassica oleracea HOM05D001948 ORTHO05D031989 2.0e-37 160.6 95 82.1
Duzib128G0126 Durio zibethinus HOM05D001948 ORTHO05D001873 1.0e-36 158.3 319 33.9
Duzib093G1794 Durio zibethinus HOM05D001948 ORTHO05D001873 1.1e-35 154.8 301 33.6
Ciclev10013662m.g Citrus clementina HOM05D001948 ORTHO05D001873 2.7e-34 150.2 331 33.5
Atru.chr8.2243 Acer truncatum HOM05D001948 ORTHO05D001873 3.6e-34 149.8 309 33.0
Gohir.A01G227400 Gossypium hirsutum HOM05D001948 ORTHO05D001873 6.1e-34 149.1 309 32.7
Gohir.D01G217200 Gossypium hirsutum HOM05D001948 ORTHO05D001873 5.2e-33 146.0 309 32.7
Gorai.002G263500 Gossypium raimondii HOM05D001948 ORTHO05D001873 5.2e-33 146.0 309 32.7
CiPaw.09G209300 Carya illinoinensis HOM05D001948 ORTHO05D001873 6.8e-33 145.6 318 32.1
QL07p019775 Quercus lobata HOM05D001948 ORTHO05D001873 6.8e-33 145.6 318 34.3
Cfa017204 Carpinus fangiana HOM05D001948 ORTHO05D001873 8.8e-33 145.2 301 32.6
THA.LOC104816193 Tarenaya hassleriana HOM05D001948 ORTHO05D001873 8.8e-33 145.2 315 32.7
CARHR211820 Cardamine hirsuta HOM05D001948 ORTHO05D001873 2.0e-32 144.1 314 33.8
A03p00300 Brassica napus HOM05D001948 ORTHO05D001873 2.6e-32 143.7 331 32.0
BcaB01g06229 Brassica carinata HOM05D001948 ORTHO05D001873 4.4e-32 142.9 331 32.3
PGR004G0061 Punica granatum HOM05D001948 ORTHO05D001873 4.4e-32 142.9 309 32.4
AL6G10620 Arabidopsis lyrata HOM05D001948 ORTHO05D001873 1.7e-31 141.0 313 32.9
Eucgr.K02982 Eucalyptus grandis HOM05D001948 ORTHO05D001873 1.7e-31 141.0 309 32.0
TWI77G0956 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 2.2e-31 140.6 312 33.0
Carub.0006s0038 Capsella rubella HOM05D001948 ORTHO05D001873 3.7e-31 139.8 313 31.3
Cpa.g.sc11.143 Carica papaya HOM05D001948 ORTHO05D001873 3.7e-31 139.8 300 31.7
Sp6g40740 Schrenkiella parvula HOM05D001948 ORTHO05D001873 3.7e-31 139.8 315 31.7
RcHm_v2.0_Chr3g0463121 Rosa chinensis HOM05D001948 ORTHO05D001873 4.8e-31 139.4 298 32.6
Prupe.6G057100 Prunus persica HOM05D001948 ORTHO05D001873 6.3e-31 139.0 300 30.7
CSS0014491 Camellia sinensis var. sinensis HOM05D001948 ORTHO05D001873 1.8e-30 137.5 300 30.7
Aa31LG6G9270 Aethionema arabicum HOM05D001948 ORTHO05D001873 2.4e-30 137.1 315 31.7
AT5G01450 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 2.4e-30 137.1 313 31.9
CiPaw.10G156700 Carya illinoinensis HOM05D001948 ORTHO05D001873 2.4e-30 137.1 299 32.4
CSS0038822 Camellia sinensis var. sinensis HOM05D001948 ORTHO05D001873 3.1e-30 136.7 312 32.1
MD11G1073800 Malus domestica HOM05D001948 ORTHO05D001873 2.0e-29 134.0 324 29.6
MD12G1166600 Malus domestica HOM05D001948 ORTHO05D001873 2.7e-29 133.7 292 31.2
CANSAT35G0330 Cannabis sativa HOM05D001948 ORTHO05D001873 3.5e-29 133.3 303 32.0
Potri.016G116300 Populus trichocarpa HOM05D001948 ORTHO05D001873 3.5e-29 133.3 309 30.7
FvH4_6g11430 Fragaria vesca HOM05D001948 ORTHO05D001873 4.5e-29 132.9 298 31.5
MD04G1153100 Malus domestica HOM05D001948 ORTHO05D001873 4.5e-29 132.9 298 31.2
BraA03t09421Z Brassica rapa HOM05D001948 ORTHO05D001873 5.9e-29 132.5 331 30.5
Potri.006G100400 Populus trichocarpa HOM05D001948 ORTHO05D001873 5.9e-29 132.5 296 33.1
Dinv05133 Davidia involucrata HOM05D001948 ORTHO05D001873 7.7e-29 132.1 314 30.9
Actinidia16096 Actinidia chinensis HOM05D001948 ORTHO05D001873 1.3e-28 131.3 281 31.7
Aa31LG1G23080 Aethionema arabicum HOM05D001948 ORTHO05D002297 2.9e-28 130.2 330 30.3
Potri.001G251900 Populus trichocarpa HOM05D001948 ORTHO05D001873 2.9e-28 130.2 307 29.6
RcHm_v2.0_Chr5g0069661 Rosa chinensis HOM05D001948 ORTHO05D001873 2.9e-28 130.2 312 29.2
FAN09G4022 Fragaria x ananassa HOM05D001948 ORTHO05D001873 3.8e-28 129.8 303 31.7
PGR119G1768 Punica granatum HOM05D001948 ORTHO05D001873 5.0e-28 129.4 322 29.2
FAN14G5042 Fragaria x ananassa HOM05D001948 ORTHO05D001873 6.5e-28 129.0 308 30.5
FvH4_3g38600 Fragaria vesca HOM05D001948 ORTHO05D001873 1.1e-27 128.3 299 29.4
GSVIVG01024737001 Vitis vinifera HOM05D001948 ORTHO05D001873 1.1e-27 128.3 301 30.6
GSVIVG01011154001 Vitis vinifera HOM05D001948 ORTHO05D001873 1.5e-27 127.9 310 30.6
TAR633G1533 Trochodendron aralioides HOM05D001948 ORTHO05D001873 1.9e-27 127.5 300 30.3
FAN14G4049 Fragaria x ananassa HOM05D001948 ORTHO05D001873 2.5e-27 127.1 304 30.9
Medtr7g068580 Medicago truncatula HOM05D001948 ORTHO05D001873 2.5e-27 127.1 285 31.6
FAN02G2396 Fragaria x ananassa HOM05D001948 ORTHO05D001873 5.5e-27 125.9 303 31.0
Sabra16G0111900 Salix brachista HOM05D001948 ORTHO05D001873 5.5e-27 125.9 317 30.0
C03p00470 Brassica napus HOM05D001948 ORTHO05D001873 7.2e-27 125.6 337 29.4
BolC3t12612H Brassica oleracea HOM05D001948 ORTHO05D001873 7.2e-27 125.6 337 29.4
Manes.01G161200 Manihot esculenta HOM05D001948 ORTHO05D001873 7.2e-27 125.6 298 30.9
Actinidia20734 Actinidia chinensis HOM05D001948 ORTHO05D001873 1.2e-26 124.8 310 30.6
COL.COLO4_19162 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.2e-26 124.8 298 27.9
Phvul.008G103400 Phaseolus vulgaris HOM05D001948 ORTHO05D001873 1.6e-26 124.4 332 29.2
Psat3g129320 Pisum sativum HOM05D001948 ORTHO05D001873 1.6e-26 124.4 311 31.8
MD03G1070000 Malus domestica HOM05D001948 ORTHO05D001873 2.1e-26 124.0 319 29.8
Manes.09G104925 Manihot esculenta HOM05D001948 ORTHO05D001873 2.1e-26 124.0 309 30.7
Nn2g13714 Nelumbo nucifera HOM05D001948 ORTHO05D001873 2.1e-26 124.0 302 31.1
CiPaw.13G077200 Carya illinoinensis HOM05D001948 ORTHO05D001873 3.6e-26 123.2 300 29.0
Glyma.07G150500 Glycine max HOM05D001948 ORTHO05D001873 3.6e-26 123.2 304 30.3
TWI53G2049 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 3.6e-26 123.2 321 29.0
Glyma.18G201500 Glycine max HOM05D001948 ORTHO05D001873 4.7e-26 122.9 304 31.2
Prupe.6G277400 Prunus persica HOM05D001948 ORTHO05D001873 4.7e-26 122.9 293 31.7
Lj1g0003596 Lotus japonicus HOM05D001948 ORTHO05D001873 6.1e-26 122.5 326 29.8
QL01p038315 Quercus lobata HOM05D001948 ORTHO05D001873 8.0e-26 122.1 306 28.4
TWI31G0364 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 1.0e-25 121.7 300 29.3
CiPaw.14G059300 Carya illinoinensis HOM05D001948 ORTHO05D001873 1.8e-25 120.9 280 29.6
Migut.J00166 Erythranthe guttata HOM05D001948 ORTHO05D001873 1.8e-25 120.9 284 30.6
Sc12g0000670 Simmondsia chinensis HOM05D001948 ORTHO05D001873 1.8e-25 120.9 300 28.3
Dinv23109 Davidia involucrata HOM05D001948 ORTHO05D001873 3.0e-25 120.2 312 29.8
PSO339G0928 Papaver somniferum HOM05D001948 ORTHO05D001873 3.0e-25 120.2 325 28.9
Cc06_g01340 Coffea canephora HOM05D001948 ORTHO05D001873 4.0e-25 119.8 308 29.5
Hma1.2p1_0962F.1_g241890 Hydrangea macrophylla HOM05D001948 ORTHO05D001873 4.0e-25 119.8 306 29.7
TAR636G0792 Trochodendron aralioides HOM05D001948 ORTHO05D001873 6.8e-25 119.0 307 29.6
Aqoxy4G02557 Aquilegia oxysepala HOM05D001948 ORTHO05D001873 1.2e-24 118.2 283 29.0
COL.COLO4_14535 Corchorus olitorius HOM05D001948 ORTHO05D001873 1.2e-24 118.2 318 28.9
Solyc09g005320.3 Solanum lycopersicum HOM05D001948 ORTHO05D001873 1.2e-24 118.2 311 29.6
Gohir.D05G089600 Gossypium hirsutum HOM05D001948 ORTHO05D001873 1.5e-24 117.9 316 27.5
Duzib170G0625 Durio zibethinus HOM05D001948 ORTHO05D001873 2.6e-24 117.1 300 28.0
Ciclev10030173m.g Citrus clementina HOM05D001948 ORTHO05D001873 3.4e-24 116.7 318 27.4
PSO384G0593 Papaver somniferum HOM05D001948 ORTHO05D001873 3.4e-24 116.7 321 28.7
Thecc.09G301400 Theobroma cacao HOM05D001948 ORTHO05D001873 3.4e-24 116.7 303 27.4
Duzib168G1714 Durio zibethinus HOM05D001948 ORTHO05D001873 4.4e-24 116.3 298 26.5
ATR0618G095 Amborella trichopoda HOM05D001948 ORTHO05D001873 2.2e-23 114.0 297 27.9
Eucgr.J01909 Eucalyptus grandis HOM05D001948 ORTHO05D001873 2.2e-23 114.0 285 28.4
PSO339G1414 Papaver somniferum HOM05D001948 ORTHO05D001873 2.2e-23 114.0 297 28.3
Sabra06G0077200 Salix brachista HOM05D001948 ORTHO05D001873 3.7e-23 113.2 275 31.6
Gohir.A05G088600 Gossypium hirsutum HOM05D001948 ORTHO05D001873 4.9e-23 112.8 297 26.6
MBI18_g24469_MAGBIO Magnolia biondii HOM05D001948 ORTHO05D001873 6.3e-23 112.5 303 28.1
Medtr3g463920 Medicago truncatula HOM05D001948 ORTHO05D001873 8.3e-23 112.1 300 31.0
Gorai.009G092000 Gossypium raimondii HOM05D001948 ORTHO05D001873 1.4e-22 111.3 278 28.4
Cpa.g.sc112.25 Carica papaya HOM05D001948 ORTHO05D001873 3.1e-22 110.2 245 31.0
Lj6g0010194 Lotus japonicus HOM05D001948 ORTHO05D001873 3.1e-22 110.2 277 29.2
Rhsim04G0128400 Rhododendron simsii HOM05D001948 ORTHO05D001873 4.1e-22 109.8 315 29.5
vmacro08875 Vaccinium macrocarpon HOM05D001948 ORTHO05D001873 4.1e-22 109.8 305 28.2
SGA_v2.0_scaffold75G25020 Striga asiatica HOM05D001948 ORTHO05D001873 9.2e-22 108.6 318 27.4
CSS0005846 Camellia sinensis var. sinensis HOM05D001948 ORTHO05D001873 1.6e-21 107.8 239 32.6
vmacro02959 Vaccinium macrocarpon HOM05D001948 ORTHO05D001873 2.0e-21 107.5 320 28.8
AUR62001642 Chenopodium quinoa HOM05D001948 ORTHO05D001873 4.5e-21 106.3 305 25.2
Cc01_g14240 Coffea canephora HOM05D001948 ORTHO05D001873 5.9e-21 105.9 309 26.9
FAN05G5492 Fragaria x ananassa HOM05D001948 ORTHO05D001873 1.3e-20 104.8 307 29.3
Nitab4.5_0002624g0040 Nicotiana tabacum HOM05D001948 ORTHO05D001873 1.7e-20 104.4 309 28.5
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.3e-20 104.0 299 27.4
Sc01g0006430 Simmondsia chinensis HOM05D001948 ORTHO05D001873 2.3e-20 104.0 305 26.9
BcaB01g06098 Brassica carinata HOM05D001948 ORTHO05D001873 2.9e-20 103.6 336 26.8
Nitab4.5_0000490g0070 Nicotiana tabacum HOM05D001948 ORTHO05D001873 3.8e-20 103.2 309 28.2
DCAR_028848 Daucus carota HOM05D000768 ORTHO05D001873 6.6e-20 102.4 313 26.5
AUR62030456 Chenopodium quinoa HOM05D001948 ORTHO05D001873 8.6e-20 102.1 300 29.7
AUR62010456 Chenopodium quinoa HOM05D001948 ORTHO05D001873 1.5e-19 101.3 300 29.3
Hund11006 Selenicereus undatus HOM05D001948 ORTHO05D001873 2.5e-19 100.5 283 28.3
Nn2g11508 Nelumbo nucifera HOM05D001948 ORTHO05D001873 9.5e-19 98.6 304 27.0
SEGI_19639 Sequoiadendron giganteum HOM05D001948 ORTHO05D001873 9.5e-19 98.6 323 27.9
EL10Ac7g16171 Beta vulgaris HOM05D001948 ORTHO05D001873 1.6e-18 97.8 279 28.3
Haze_24330 Corylus avellana HOM05D001948 ORTHO05D001873 1.6e-18 97.8 293 28.3
arahy.Tifrunner.gnm1.ann1.P8JV7Z Arachis hypogaea HOM05D001948 ORTHO05D001873 2.1e-18 97.4 316 27.8
Nn2g11506 Nelumbo nucifera HOM05D001948 ORTHO05D001873 2.1e-18 97.4 297 27.3
Actinidia05366 Actinidia chinensis HOM05D001948 ORTHO05D001873 3.6e-18 96.7 274 28.8
AUR62020135 Chenopodium quinoa HOM05D001948 ORTHO05D001873 1.0e-17 95.1 305 24.9
Lj2C75T2 Lonicera japonica HOM05D001948 ORTHO05D001873 1.4e-17 94.7 301 28.2
Peaxi162Scf00141g01117 Petunia axillaris HOM05D001948 ORTHO05D001873 4.0e-17 93.2 311 28.3
Atru.chr3.4216 Acer truncatum HOM05D001948 ORTHO05D001873 6.8e-17 92.4 218 31.2
SalBow5G1578 Salvia bowleyana HOM05D001948 ORTHO05D001873 8.9e-17 92.0 189 32.8
arahy.Tifrunner.gnm1.ann1.VN0MC0 Arachis hypogaea HOM05D001948 ORTHO05D001873 1.5e-16 91.3 316 26.3
Dinv28643 Davidia involucrata HOM05D001948 ORTHO05D001873 2.6e-16 90.5 248 27.8
CDE04G0559 Ceratophyllum demersum HOM05D001948 ORTHO05D001873 3.4e-16 90.1 242 28.5
Sabra16G0153200 Salix brachista HOM05D001948 ORTHO05D001873 3.4e-16 90.1 323 26.6
Ca_26449_v3 Cicer arietinum L. HOM05D001948 ORTHO05D001873 4.4e-16 89.7 312 26.0
Ah.12g058620 Amaranthus hybridus HOM05D001948 ORTHO05D001873 1.7e-15 87.8 248 29.4
CDE02G1590 Ceratophyllum demersum HOM05D001948 ORTHO05D001873 2.4e-14 84.0 269 27.1
Haze_21004 Corylus avellana HOM05D001948 ORTHO05D001873 2.4e-14 84.0 350 26.0
TPR.G8411 Trifolium pratense HOM05D001948 ORTHO05D001873 2.4e-14 84.0 339 24.5
CDE02G4230 Ceratophyllum demersum HOM05D001948 ORTHO05D001873 9.2e-14 82.0 236 28.4
Nn1g04652 Nelumbo nucifera HOM05D001948 ORTHO05D001873 2.7e-13 80.5 283 25.1
Medtr1g018650 Medicago truncatula HOM05D001948 ORTHO05D001873 1.7e-12 77.8 242 22.3
PGR083G0798 Punica granatum HOM05D001948 ORTHO05D001873 6.6e-12 75.9 242 22.7
CANSAT25G1733 Cannabis sativa HOM05D001948 ORTHO05D001873 4.3e-11 73.2 264 23.5
Psat6g014360 Pisum sativum HOM05D001948 ORTHO05D001873 9.5e-11 72.0 248 23.8
Sopen09g001290 Solanum pennellii HOM05D001948 ORTHO05D001873 3.6e-10 70.1 99 36.4
Ah.08g221210 Amaranthus hybridus HOM05D001948 ORTHO05D001873 4.7e-10 69.7 317 21.1
PSO675G6254 Papaver somniferum HOM05D001948 ORTHO05D001873 2.6e-08 63.9 274 21.9
CDE04G1335 Ceratophyllum demersum HOM05D001948 ORTHO05D001873 3.4e-08 63.5 296 22.0
arahy.Tifrunner.gnm1.ann1.5G0R51 Arachis hypogaea HOM05D001948 ORTHO05D001873 9.8e-08 62.0 244 23.0
Hund18845 Selenicereus undatus HOM05D001948 ORTHO05D001873 3.7e-07 60.1 85 35.3
Aqoxy6G02827 Aquilegia oxysepala HOM05D001948 ORTHO05D001873 1.1e-06 58.5 252 24.6


User provided reference genes

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