Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.7e-191 671.8 332 100.0
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 4.2e-184 647.9 335 96.1
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 2.0e-157 559.3 324 87.0
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 5.4e-147 524.6 343 81.9
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 4.7e-143 511.5 323 81.1
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 7.3e-136 487.6 331 77.0
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 6.9e-134 481.1 334 76.0
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 9.0e-134 480.7 334 75.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.7e-132 476.5 333 75.4
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 6.4e-132 474.6 333 75.1
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.1e-130 469.5 335 74.6
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.1e-130 469.5 335 74.6
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 4.8e-127 458.4 335 73.4
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.4e-124 448.0 327 71.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 5.1e-121 438.3 328 71.3
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 6.2e-119 431.4 382 63.1
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.6e-114 416.8 326 67.2
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.6e-106 388.7 305 69.8
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 2.7e-98 362.8 335 58.2
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.0e-96 356.7 310 62.3
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.5e-77 292.4 327 53.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 2.7e-74 283.1 312 50.0
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.7e-69 266.5 304 48.4
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.3e-68 264.2 298 48.3
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-67 260.4 304 48.0
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 4.2e-67 259.2 306 48.4
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.8e-66 256.5 320 45.0
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.7e-66 255.8 304 47.7
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 8.0e-66 255.0 308 47.7
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 5.7e-64 248.8 298 47.3
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 5.7e-64 248.8 294 45.9
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 7.5e-64 248.4 315 44.1
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 8.3e-63 245.0 383 37.1
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 8.3e-63 245.0 383 37.1
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 8.3e-63 245.0 302 45.0
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 8.3e-63 245.0 326 43.9
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.1e-62 244.6 297 45.1
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.4e-62 244.2 308 45.8
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.8e-62 243.8 308 45.8
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 3.1e-62 243.0 301 46.5
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 5.4e-62 242.3 314 43.3
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 9.2e-62 241.5 301 45.2
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.2e-61 241.1 298 43.3
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 1.6e-61 240.7 291 45.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 2.0e-61 240.4 302 44.7
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 2.7e-61 240.0 316 43.7
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 3.5e-61 239.6 304 45.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 7.8e-61 238.4 294 44.9
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 7.8e-61 238.4 311 43.1
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 3.8e-60 236.1 298 42.3
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.0e-60 235.7 314 43.0
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 5.0e-60 235.7 297 44.1
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 5.0e-60 235.7 322 41.3
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 5.0e-60 235.7 308 43.5
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 6.6e-60 235.3 303 44.6
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 8.6e-60 235.0 326 42.3
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.5e-59 234.2 299 43.1
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.9e-59 233.8 306 40.8
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.5e-59 233.4 311 42.8
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 3.3e-59 233.0 302 44.4
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.3e-59 232.6 314 42.0
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 4.3e-59 232.6 296 41.9
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 5.6e-59 232.3 309 44.7
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 7.3e-59 231.9 305 43.3
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 7.3e-59 231.9 311 42.8
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 9.5e-59 231.5 297 42.8
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.6e-58 230.7 295 41.7
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.1e-58 230.3 297 42.8
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.8e-58 229.9 303 44.2
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 3.6e-58 229.6 285 41.1
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.6e-58 229.6 299 43.1
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 6.1e-58 228.8 294 44.6
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 8.0e-58 228.4 313 44.1
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.8e-57 227.3 301 42.9
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.8e-57 227.3 290 44.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.8e-57 227.3 290 44.1
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.3e-57 226.9 297 44.1
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.0e-57 226.1 306 43.8
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 5.2e-57 225.7 314 41.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 5.2e-57 225.7 313 41.5
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 6.8e-57 225.3 308 43.5
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 6.8e-57 225.3 298 43.6
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 6.8e-57 225.3 295 41.0
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-56 224.6 347 41.5
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 2.0e-56 223.8 301 41.9
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.4e-56 222.6 306 44.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 4.4e-56 222.6 302 42.4
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-55 220.7 291 43.0
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 2.9e-55 219.9 300 42.3
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 6.4e-55 218.8 307 41.0
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 6.4e-55 218.8 308 43.5
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 9.2e-54 214.9 291 42.6
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 9.2e-54 214.9 307 42.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.2e-53 214.5 286 43.0
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-53 214.5 283 44.5
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.0e-53 212.2 243 51.4
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 1.7e-52 210.7 291 40.5
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 3.0e-52 209.9 284 44.4
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.1e-51 208.0 300 43.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 5.6e-51 205.7 304 40.1
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.4e-49 201.1 356 37.1
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 6.8e-49 198.7 328 40.2
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 8.9e-49 198.4 265 43.8
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 5.8e-48 195.7 293 42.0
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.9e-47 193.4 283 40.3
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.4e-46 191.0 279 40.1
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.9e-46 190.7 299 40.1
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 5.4e-46 189.1 281 39.9
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 5.0e-44 182.6 328 36.3
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.5e-43 181.0 356 34.6
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.9e-43 180.6 292 40.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.3e-43 179.5 328 35.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.3e-43 178.7 290 41.4
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 3.6e-42 176.4 320 35.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 8.9e-41 171.8 175 50.3
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.0e-40 170.6 274 36.1
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.8e-40 169.1 186 48.4
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.8e-40 169.1 282 37.9
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.0e-37 159.1 321 34.0
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-36 157.5 177 48.0
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 6.6e-36 155.6 343 33.2
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 3.6e-34 149.8 233 41.2
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 4.7e-34 149.4 185 44.9
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 4.0e-33 146.4 145 51.0
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 1.3e-31 141.4 331 32.9
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.2e-31 140.6 143 49.0
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.9e-31 140.2 332 34.9
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 4.9e-31 139.4 356 32.9
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.1e-29 134.0 352 33.5
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 4.6e-29 132.9 193 42.5
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.0e-28 131.7 343 33.2
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.3e-28 130.6 285 34.0
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 2.5e-27 127.1 155 45.2
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 6.2e-26 122.5 149 43.6
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 8.1e-26 122.1 302 32.5
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-25 121.7 391 27.6
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.4e-25 120.6 386 29.3
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 5.8e-24 115.9 100 56.0
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 3.2e-22 110.2 104 54.8
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 9.3e-22 108.6 333 31.5
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.1e-21 107.5 335 29.3
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 2.7e-21 107.1 154 40.9
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 3.5e-21 106.7 160 39.4
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 4.6e-21 106.3 135 40.7
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 1.0e-20 105.1 267 33.0
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 3.9e-20 103.2 331 29.0
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 1.1e-19 101.7 332 30.1
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.6e-19 99.4 160 40.0
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.9e-17 92.4 113 44.2
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.0e-17 92.0 185 34.1
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.1e-14 85.1 155 36.1
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.2e-14 83.6 125 39.2
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.3e-12 78.2 179 33.0
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.8e-10 70.5 94 40.4
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 3.7e-10 70.1 154 32.5
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 8.1e-10 68.9 152 31.6
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 1.1e-09 68.6 332 26.5
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.3e-09 66.2 207 27.5
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.8e-07 60.1 177 29.4
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 6.4e-07 59.3 57 47.4
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 2.5e-06 57.4 63 46.0


User provided reference genes

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