Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p08580 Brassica napus HOM05D005073 ORTHO05D006166 1.7e-66 255.8 123 100.0
BraA04t16552Z Brassica rapa HOM05D005073 ORTHO05D006166 1.7e-66 255.8 123 100.0
C05p36400 Brassica napus HOM05D005073 ORTHO05D006166 1.3e-58 229.6 123 92.7
BcaC05g27652 Brassica carinata HOM05D005073 ORTHO05D006166 2.3e-58 228.8 123 91.9
A09p41080 Brassica napus HOM05D005073 ORTHO05D006166 7.3e-57 223.8 123 89.4
C08p22880 Brassica napus HOM05D005073 ORTHO05D006166 7.3e-57 223.8 126 89.7
C09p47800 Brassica napus HOM05D005073 ORTHO05D006166 7.3e-57 223.8 123 90.2
BolC8t49924H Brassica oleracea HOM05D005073 ORTHO05D006166 7.3e-57 223.8 126 89.7
BraA09t39601Z Brassica rapa HOM05D005073 ORTHO05D006166 9.6e-57 223.4 123 88.6
BcaC06g36777 Brassica carinata HOM05D005073 ORTHO05D006166 3.6e-56 221.5 123 89.4
BolC7t40457H Brassica oleracea HOM05D005073 ORTHO05D006166 3.6e-56 221.5 123 89.4
BcaC07g39279 Brassica carinata HOM05D005073 ORTHO05D006166 1.1e-55 219.9 126 88.9
BolC7t40456H Brassica oleracea HOM05D005073 ORTHO05D006166 1.4e-55 219.5 123 90.2
A03p65370 Brassica napus HOM05D005073 ORTHO05D006166 4.0e-55 218.0 121 90.9
BraA03t15591Z Brassica rapa HOM05D005073 ORTHO05D006166 4.0e-55 218.0 121 90.9
BcaC06g36780 Brassica carinata HOM05D005073 ORTHO05D094611 5.3e-39 164.5 95 89.5
C07p00040 Brassica napus HOM05D005073 ORTHO05D006166 3.8e-21 105.1 53 88.7
C07p00050 Brassica napus HOM05D005073 ORTHO05D006166 1.9e-20 102.8 53 86.8
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 1.7e-16 89.7 112 52.7
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 2.2e-16 89.4 112 51.8
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 2.2e-16 89.4 112 51.8
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 6.3e-16 87.8 112 50.9
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 6.3e-16 87.8 112 50.9
Carub.0002s2490 Capsella rubella HOM05D005073 ORTHO05D006166 6.3e-16 87.8 112 50.9
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 6.3e-16 87.8 112 50.9
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 1.1e-15 87.0 112 50.9
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 1.8e-15 86.3 112 49.1
CARHR071470 Cardamine hirsuta HOM05D005073 ORTHO05D006166 2.4e-15 85.9 112 50.0
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 4.1e-15 85.1 114 48.2
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 9.1e-15 84.0 112 48.2
Atru.chr13.1265 Acer truncatum HOM05D005073 ORTHO05D006166 1.5e-14 83.2 112 48.2
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 2.0e-14 82.8 112 49.1
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 2.0e-14 82.8 112 49.1
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 2.0e-14 82.8 117 46.2
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 2.6e-14 82.4 112 49.1
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 2.6e-14 82.4 112 47.3
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.6e-14 82.4 112 48.2
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.6e-14 82.4 112 48.2
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 2.6e-14 82.4 112 48.2
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 3.4e-14 82.0 112 49.1
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 3.4e-14 82.0 112 49.1
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 3.4e-14 82.0 114 50.0
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 4.5e-14 81.6 106 48.1
CAN.G517.17 Capsicum annuum HOM05D005073 ORTHO05D006166 4.5e-14 81.6 112 48.2
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 4.5e-14 81.6 112 47.3
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 4.5e-14 81.6 114 47.4
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 4.5e-14 81.6 112 47.3
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 4.5e-14 81.6 112 46.4
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 4.5e-14 81.6 112 48.2
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 5.9e-14 81.3 112 48.2
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 5.9e-14 81.3 112 48.2
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 5.9e-14 81.3 112 46.4
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 7.7e-14 80.9 112 48.2
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 7.7e-14 80.9 112 46.4
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 7.7e-14 80.9 112 46.4
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 7.7e-14 80.9 112 45.5
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 7.7e-14 80.9 112 47.3
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 1.0e-13 80.5 116 44.8
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 1.0e-13 80.5 112 46.4
Dinv44743 Davidia involucrata HOM05D005073 ORTHO05D006166 1.0e-13 80.5 112 47.3
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 1.0e-13 80.5 112 46.4
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 1.0e-13 80.5 112 46.4
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 1.3e-13 80.1 112 46.4
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 1.3e-13 80.1 112 48.2
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 1.7e-13 79.7 112 47.3
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 1.7e-13 79.7 112 46.4
Phvul.009G028601 Phaseolus vulgaris HOM05D005073 ORTHO05D006166 1.7e-13 79.7 112 45.5
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 1.7e-13 79.7 112 46.4
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 46.4
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 48.2
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 48.2
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 48.2
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 46.4
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 47.3
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 46.4
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 46.4
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 2.2e-13 79.3 112 45.5
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 48.2
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 47.3
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 48.2
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 47.3
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 48.2
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 47.3
Sc12g0004230 Simmondsia chinensis HOM05D005073 ORTHO05D006166 2.9e-13 79.0 112 45.5
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 3.8e-13 78.6 112 46.4
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 3.8e-13 78.6 112 46.4
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 3.8e-13 78.6 112 46.4
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 3.8e-13 78.6 112 45.5
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 3.8e-13 78.6 114 46.5
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 6.5e-13 77.8 112 44.6
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 6.5e-13 77.8 112 46.4
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 6.5e-13 77.8 112 45.5
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 6.5e-13 77.8 112 46.4
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 6.5e-13 77.8 112 46.4
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 8.5e-13 77.4 112 44.6
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 8.5e-13 77.4 112 46.4
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 8.5e-13 77.4 112 46.4
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 8.5e-13 77.4 112 45.5
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 1.4e-12 76.6 112 44.6
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.4e-12 76.6 109 46.8
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.4e-12 76.6 112 45.5
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 1.4e-12 76.6 112 45.5
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 1.9e-12 76.3 112 42.9
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 1.9e-12 76.3 112 44.6
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 2.5e-12 75.9 112 43.8
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 4.2e-12 75.1 116 44.0
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 4.2e-12 75.1 112 42.9
Mapoly0034s0014 Marchantia polymorpha HOM05D005073 ORTHO05D006166 1.2e-11 73.6 116 40.5
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 1.2e-11 73.6 116 41.4
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 1.2e-11 73.6 116 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 7.9e-11 70.9 116 40.5
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 1.8e-10 69.7 116 38.8
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 1.8e-10 69.7 116 38.8
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 3.0e-10 68.9 101 45.5
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 3.9e-10 68.6 114 37.7
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 5.1e-10 68.2 92 48.9
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 6.7e-10 67.8 116 37.1
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 1.1e-07 60.5 43 67.4
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 1.1e-07 60.5 43 67.4
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 1.8e-07 59.7 43 62.8
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 2.4e-07 59.3 43 62.8
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 4.1e-07 58.5 43 62.8
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 5.3e-07 58.2 116 37.9
QL12p035939 Quercus lobata HOM05D005073 ORTHO05D006166 5.3e-07 58.2 45 60.0
BraA10t43482Z Brassica rapa HOM05D018368 ORTHO05D015496 1.5e-06 56.6 73 45.2


User provided reference genes

Program Settings