Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1649.0 814 100.0
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1611.7 799 99.7
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1590.5 798 98.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1590.5 798 98.1
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1584.3 799 97.9
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1582.0 798 97.1
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1548.9 798 95.5
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1527.7 798 93.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1524.6 798 93.5
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1517.7 799 92.9
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1514.2 799 93.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1513.4 799 92.7
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1508.8 798 92.6
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1497.3 800 92.5
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1483.0 797 90.2
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1480.3 797 90.1
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1455.3 798 88.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1400.6 854 81.6
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1382.1 757 89.0
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1360.1 812 80.7
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1291.6 808 77.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1290.0 808 77.0
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1290.0 810 77.3
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1289.6 807 77.2
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 810 77.4
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1287.7 810 77.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 808 77.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1286.2 810 77.3
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 809 76.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 808 76.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 807 76.6
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 811 76.1
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 806 77.4
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 810 76.8
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1278.1 808 76.6
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1276.2 806 75.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 808 76.6
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 807 75.8
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 806 77.0
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1273.8 817 75.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 808 75.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 805 75.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1270.0 806 76.3
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 806 76.9
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 811 76.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 809 74.4
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1266.1 811 75.6
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 806 75.8
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 800 76.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 811 75.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 811 75.2
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 804 75.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 803 75.8
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 811 75.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 808 75.5
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 805 75.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 810 76.0
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 807 75.6
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1253.8 805 75.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 806 75.7
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 805 75.3
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 807 75.0
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1249.2 807 74.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 803 75.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 805 75.8
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 806 75.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1236.9 804 74.1
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 805 73.8
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 811 73.1
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1222.2 884 68.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1216.8 796 73.4
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1214.9 807 72.5
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1213.7 798 73.1
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1212.6 807 73.0
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 801 72.9
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1204.9 812 72.7
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 809 72.1
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 804 72.0
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 801 72.4
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1199.5 800 72.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 828 71.5
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 804 71.8
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1194.5 804 71.8
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 811 72.1
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1193.3 805 72.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1186.8 808 72.2
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 802 71.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 805 72.7
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1178.3 806 70.6
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1174.8 804 69.7
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1174.1 804 70.6
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1171.0 805 70.2
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 869 67.5
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1160.2 802 70.4
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1157.5 857 66.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 805 69.6
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1152.1 801 70.3
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1151.7 786 71.9
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1150.2 803 68.9
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1148.3 809 71.7
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1140.9 810 69.5
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1131.7 819 68.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1112.8 911 62.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1099.3 811 67.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1095.5 775 68.4
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1095.5 813 66.3
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1089.7 802 66.5
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1086.2 962 59.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1084.3 820 64.9
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.6e-312 1074.7 962 58.9
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.2e-298 1028.9 805 64.3
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.1e-289 1000.0 794 61.7
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 7.0e-289 997.3 812 63.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 3.9e-271 938.3 802 59.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 6.8e-268 927.5 605 73.6
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 7.1e-233 811.2 780 56.8
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.2e-194 683.3 853 45.1
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.5e-177 627.5 381 77.4
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.7e-166 589.0 829 40.9
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.8e-150 535.8 947 35.0
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 9.8e-150 535.0 802 41.1
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 4.7e-144 516.2 843 38.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.4e-124 450.7 454 53.7
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.7e-107 394.0 316 60.4
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.1e-104 384.4 244 72.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 2.1e-99 367.9 344 58.7
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.5e-89 335.1 236 72.5
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.6e-73 281.2 198 69.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 8.8e-66 256.1 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 8.0e-51 206.5 665 28.3
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.2e-47 193.0 141 72.3
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 5.9e-46 190.3 190 58.4
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 8.6e-37 159.8 90 80.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.1e-35 155.2 263 40.3
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 5.2e-34 150.6 133 52.6
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.4e-33 147.5 102 66.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.1e-31 141.0 104 61.5
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.5e-28 132.5 176 44.3
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.3e-28 131.3 118 58.5
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.3e-28 131.0 100 68.0
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.3e-28 130.2 89 73.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 9.5e-28 129.8 190 42.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.2e-27 129.4 120 58.3
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.6e-27 129.0 113 49.6
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.2e-24 118.6 259 32.0
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.6e-22 112.5 114 52.6
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 6.6e-21 107.1 175 38.3
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.8e-19 101.7 65 72.3
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.7e-16 92.4 50 82.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.1e-15 89.7 73 65.8
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.4e-15 89.4 58 74.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.9e-15 89.0 43 88.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 3.0e-13 81.6 143 44.1
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 5.1e-13 80.9 68 60.3
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 4.7e-11 74.3 60 51.7
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 6.2e-11 73.9 129 38.0
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.4e-10 72.0 459 21.6
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 6.9e-10 70.5 404 22.0
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 1.2e-09 69.7 460 21.3
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 6.4e-08 63.9 57 54.4
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.9e-07 62.4 68 50.0
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.9e-07 62.4 464 21.8
TAR626G1591 Trochodendron aralioides HOM05D000344 ORTHO05D003478 2.4e-07 62.0 421 21.4
Lsat_1_v5_gn_3_22740 Lactuca sativa HOM05D000344 ORTHO05D003478 1.6e-06 59.3 464 21.8
Nn8g40092 Nelumbo nucifera HOM05D000344 ORTHO05D003478 3.5e-06 58.2 407 20.6


User provided reference genes

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