Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1771.9 941 100.0
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1755.0 969 97.0
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1743.4 942 98.2
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1742.6 941 98.1
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1639.4 941 91.1
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1624.8 942 90.0
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1590.5 953 88.0
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1587.0 953 87.9
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1584.7 952 87.6
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1573.5 954 87.3
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1511.5 992 81.2
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1434.5 970 78.5
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1325.8 929 75.1
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1321.6 938 74.2
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1309.3 856 78.0
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1308.5 931 73.8
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1303.1 957 71.5
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1303.1 841 78.7
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1302.3 937 73.3
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1300.4 938 73.7
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1300.0 843 79.7
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1299.3 856 77.3
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1297.7 841 78.4
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1297.0 840 78.5
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1293.5 935 73.5
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1293.1 834 77.5
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1291.6 961 72.2
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1290.4 852 77.5
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1289.6 847 77.2
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1286.9 852 77.3
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1285.0 841 77.6
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1285.0 931 72.6
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1283.1 842 77.6
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1283.1 930 72.3
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1280.8 922 72.3
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1280.4 939 71.4
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1280.0 840 77.0
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1280.0 845 77.5
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1279.6 944 71.8
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1278.1 839 77.7
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1276.5 840 76.8
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1275.8 927 72.3
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1273.5 849 76.0
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1273.1 868 75.2
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1273.1 933 71.6
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1271.9 926 71.2
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1270.8 849 75.7
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1269.6 842 77.0
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1266.1 898 73.3
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1265.8 840 76.1
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1264.2 863 75.9
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1263.8 840 76.1
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1263.4 840 76.0
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1263.1 850 76.0
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1262.7 890 74.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1261.5 857 75.4
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1259.2 950 70.0
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1258.4 928 70.8
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1247.3 925 71.7
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1247.3 854 75.4
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1246.9 851 73.7
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1243.0 909 71.5
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1242.3 843 74.7
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1240.3 844 74.4
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1239.6 939 70.5
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1238.0 837 75.9
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1233.0 836 74.3
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1231.5 836 74.4
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1230.7 930 69.9
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1229.9 842 75.9
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1226.1 851 72.6
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1216.1 851 71.4
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1216.1 839 72.5
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1214.1 878 72.3
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1212.2 934 69.5
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1209.9 976 67.1
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1208.0 849 74.1
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1198.3 876 71.0
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1171.0 867 70.5
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1164.4 956 65.6
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1129.8 993 63.4
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1123.6 848 66.3
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1110.5 711 77.6
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1103.6 808 71.8
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1100.5 734 77.8
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1084.3 731 76.3
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1075.8 727 76.1
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 1.2e-300 1036.6 842 61.6
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 1.5e-295 1019.6 838 60.6
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 4.9e-286 988.0 848 58.5
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 2.8e-257 892.5 857 53.2
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.8e-248 863.2 640 71.2
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 1.1e-240 837.4 558 74.0
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 3.7e-217 759.2 615 66.2
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 3.8e-206 722.6 545 71.0
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 6.6e-206 721.8 486 73.7
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 1.4e-203 714.1 529 64.5
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 4.1e-200 702.6 858 46.4
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 7.0e-200 701.8 1083 42.1
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 2.5e-189 666.8 403 78.9
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 5.2e-187 659.1 549 65.6
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 2.4e-184 650.2 847 43.1
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 1.4e-171 607.8 446 71.5
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 4.0e-171 606.3 456 70.2
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 1.2e-170 604.7 442 73.5
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 2.0e-154 550.8 339 77.3
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 7.6e-154 548.9 349 77.9
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 7.6e-154 548.9 418 67.5
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 4.3e-133 479.9 709 41.0
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 3.7e-108 397.1 288 73.6
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 1.0e-102 379.0 337 60.5
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 1.7e-92 345.1 262 60.7
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 7.0e-91 339.7 204 82.4
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 9.2e-83 312.8 316 51.3
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 1.5e-77 295.4 314 57.6
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 1.4e-75 288.9 305 61.0
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 4.0e-70 270.8 210 66.2
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 1.3e-68 265.8 170 87.6
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 3.7e-68 264.2 170 74.7
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 4.9e-68 263.8 217 67.3
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 6.6e-65 253.4 187 71.1
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 4.1e-59 234.2 155 74.8
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 4.3e-56 224.2 180 70.0
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 2.2e-52 211.8 107 91.6
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 7.3e-48 196.8 121 79.3
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 1.2e-42 179.5 96 88.5
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 2.3e-41 175.3 129 68.2
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 7.4e-32 143.7 90 76.7
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 9.6e-32 143.3 90 75.6
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.2e-26 126.3 90 67.8
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 8.7e-25 120.2 74 79.7
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 4.1e-22 111.3 90 64.4
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.0e-20 106.7 100 58.0
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 1.7e-20 105.9 84 72.6
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 1.4e-19 102.8 143 49.0
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 3.2e-19 101.7 51 96.1
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.2e-18 99.8 86 58.1
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 2.7e-18 98.6 59 76.3
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 2.7e-18 98.6 76 68.4
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 3.6e-18 98.2 70 67.1
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.0e-17 96.7 387 24.8
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.1e-16 93.2 390 24.9
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 4.8e-15 87.8 166 39.2
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 8.2e-15 87.0 357 24.9
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 8.2e-15 87.0 514 23.5
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 1.1e-14 86.7 43 90.7
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 1.8e-14 85.9 118 44.9
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.8e-14 85.9 391 24.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.3e-14 84.3 325 25.8
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 6.9e-14 84.0 168 32.1
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 9.0e-14 83.6 516 24.2
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.6e-13 82.0 490 24.3
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.4e-13 81.6 368 23.9
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 5.9e-13 80.9 544 22.6
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 1.3e-12 79.7 43 86.0
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.7e-12 79.3 167 32.9
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 2.2e-12 79.0 174 30.5
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 6.5e-12 77.4 348 24.4
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 6.5e-12 77.4 532 23.3
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 8.5e-12 77.0 361 24.9
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 8.5e-12 77.0 523 22.4
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.1e-11 76.6 506 24.3
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.4e-11 76.3 290 25.9
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 2.5e-11 75.5 43 83.7
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 3.2e-11 75.1 485 22.9
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 5.5e-11 74.3 366 24.0
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 1.6e-10 72.8 386 22.8
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 3.6e-10 71.6 60 61.7
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.6e-10 71.6 167 34.7
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 4.6e-10 71.2 497 24.9
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 7.9e-10 70.5 587 21.8
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 7.9e-10 70.5 168 31.0
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 7.9e-10 70.5 488 22.1
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 2.3e-09 68.9 211 25.1
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.3e-09 68.9 178 29.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.0e-09 68.6 176 29.5
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 8.8e-09 67.0 199 26.1
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 1.1e-08 66.6 261 24.9
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 7.4e-08 63.9 172 27.3
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.3e-07 63.2 85 43.5
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.7e-07 62.8 49 65.3
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 1.1e-06 60.1 181 26.5
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 6.9e-06 57.4 191 24.6


User provided reference genes

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