Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.0e-141 505.8 252 100.0
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 3.0e-137 491.9 277 91.0
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 4.7e-127 458.0 252 90.9
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 3.7e-124 448.4 252 88.9
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 3.2e-123 445.3 252 89.3
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.8e-78 296.6 319 56.7
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.1e-75 287.3 314 55.1
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.6e-74 283.5 310 55.8
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.7e-74 282.7 314 54.8
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.0e-73 280.8 310 55.2
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 6.7e-73 278.1 311 53.7
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 8.8e-73 277.7 310 55.2
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.5e-72 276.9 327 52.0
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 4.8e-71 271.9 314 53.5
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.3e-70 268.5 309 52.1
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 4.2e-67 258.8 312 51.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.6e-66 256.9 309 51.8
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.0e-48 196.8 190 57.9
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.4e-32 142.5 232 38.4
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.2e-31 140.2 198 41.9
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.3e-31 138.3 214 38.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 8.3e-31 138.3 231 40.3
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 9.2e-30 134.8 236 36.4
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.5e-27 127.5 251 33.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.9e-27 127.1 246 34.6
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.3e-27 126.3 242 36.8
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.6e-27 125.6 247 35.2
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.2e-26 124.4 277 30.7
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.6e-26 124.0 229 33.2
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 4.7e-26 122.5 242 39.3
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 6.1e-26 122.1 274 34.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 3.1e-25 119.8 230 34.8
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 4.0e-25 119.4 258 31.8
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 4.0e-25 119.4 258 31.8
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-24 117.9 216 38.0
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.3e-23 114.4 239 32.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.3e-23 114.4 238 31.1
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 2.2e-23 113.6 248 31.5
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.9e-23 113.2 232 33.6
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.9e-23 113.2 206 31.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.4e-23 112.1 273 32.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 8.3e-23 111.7 214 34.1
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.2e-22 109.8 246 32.1
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.4e-22 109.0 280 30.7
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.0e-22 108.6 235 31.9
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 9.2e-22 108.2 202 35.1
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.6e-21 107.5 237 32.5
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.6e-21 107.5 250 32.4
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 2.0e-21 107.1 112 49.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 6.0e-21 105.5 243 29.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.0e-20 104.8 248 30.2
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.7e-20 104.0 135 47.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.0e-20 103.2 239 32.2
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.0e-20 102.4 123 44.7
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.1e-19 101.3 124 46.8
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.1e-19 101.3 230 32.6
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 3.3e-19 99.8 248 30.2
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 4.3e-19 99.4 267 29.2
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 4.3e-19 99.4 256 28.1
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 9.5e-19 98.2 248 29.8
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.6e-18 97.4 253 27.3
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 2.1e-18 97.1 124 42.7
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 4.7e-18 95.9 129 42.6
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 6.2e-18 95.5 143 38.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 8.0e-18 95.1 243 30.0
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.1e-17 94.7 261 25.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.1e-17 94.7 279 28.7
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.1e-17 94.7 133 41.4
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 3.1e-17 93.2 244 26.6
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 4.0e-17 92.8 315 23.8
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-16 91.3 292 27.1
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 4.4e-16 89.4 201 32.8
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 7.5e-16 88.6 165 36.4
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 7.5e-16 88.6 213 34.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.3e-15 87.8 181 35.4
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.4e-15 85.5 133 39.8
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.4e-14 83.6 132 37.1
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.2e-13 81.3 322 24.5
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 1.6e-13 80.9 129 43.4
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 3.5e-13 79.7 250 25.6
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 3.5e-13 79.7 142 31.0
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 4.6e-13 79.3 129 42.6
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 4.6e-13 79.3 129 42.6
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.3e-12 77.8 262 27.5
BcaB05g22585 Brassica carinata HOM05D006496 ORTHO05D008390 2.3e-12 77.0 163 36.2
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 3.0e-12 76.6 202 28.7
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 2.5e-11 73.6 218 31.2
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 2.5e-11 73.6 139 35.3
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.6e-10 70.9 211 30.8
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 2.1e-10 70.5 132 31.8
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 2.1e-10 70.5 132 31.8
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.1e-10 70.5 257 25.3
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 2.8e-10 70.1 130 31.5
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.8e-10 70.1 308 25.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 6.2e-10 68.9 218 30.3
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.2e-10 68.9 211 25.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.8e-09 67.4 163 28.2
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 2.3e-09 67.0 47 61.7
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 2.3e-09 67.0 69 47.8
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 4.0e-09 66.2 114 39.5
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 8.9e-09 65.1 85 40.0
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.2e-08 64.7 124 31.5
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.2e-08 64.7 135 33.3
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.2e-08 64.7 147 33.3
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 1.5e-08 64.3 128 35.9
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.5e-08 64.3 131 29.0
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.5e-08 64.3 119 38.7
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.5e-08 64.3 132 34.1
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.0e-08 63.9 136 30.1
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.0e-08 63.9 60 51.7
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 3.4e-08 63.2 132 34.1
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 3.4e-08 63.2 133 33.1
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.4e-08 63.2 110 36.4
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 3.4e-08 63.2 60 50.0
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.4e-08 63.2 62 53.2
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 4.4e-08 62.8 132 32.6
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 4.4e-08 62.8 153 35.9
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.4e-08 62.8 143 31.5
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.8e-08 62.4 108 37.0
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 5.8e-08 62.4 140 32.1
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.6e-08 62.0 51 56.9
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 7.6e-08 62.0 60 55.0
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 9.9e-08 61.6 137 31.4
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 9.9e-08 61.6 160 28.8
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 9.9e-08 61.6 132 36.4
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.3e-07 61.2 131 31.3
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.3e-07 61.2 136 31.6
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.3e-07 61.2 140 27.9
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.7e-07 60.8 136 27.2
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.7e-07 60.8 54 51.9
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.2e-07 60.5 119 39.5
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.2e-07 60.5 119 38.7
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.2e-07 60.5 119 38.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.2e-07 60.5 131 30.5
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 2.2e-07 60.5 55 50.9
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.9e-07 60.1 67 46.3
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.9e-07 60.1 120 34.2
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.7e-07 59.7 160 31.2
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 3.7e-07 59.7 133 32.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 3.7e-07 59.7 105 34.3
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.7e-07 59.7 136 25.7
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.9e-07 59.3 130 30.8
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 4.9e-07 59.3 130 30.8
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 4.9e-07 59.3 137 29.9
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 6.4e-07 58.9 143 31.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.4e-07 58.9 136 28.7
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 6.4e-07 58.9 125 32.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 6.4e-07 58.9 136 29.4
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 8.3e-07 58.5 136 27.2
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 8.3e-07 58.5 130 30.0
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 8.3e-07 58.5 135 30.4
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 8.3e-07 58.5 138 35.5
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 8.3e-07 58.5 76 44.7
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.1e-06 58.2 131 35.1
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.1e-06 58.2 132 30.3
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.1e-06 58.2 139 30.2
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-06 58.2 136 33.8
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 1.1e-06 58.2 129 32.6
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.1e-06 58.2 135 29.6
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.1e-06 58.2 133 27.1
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.1e-06 58.2 49 55.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-06 57.8 132 31.1
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.4e-06 57.8 132 31.1
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.9e-06 57.4 138 34.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.9e-06 57.4 129 28.7
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-06 57.0 129 30.2
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.4e-06 57.0 138 29.7
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.4e-06 57.0 136 27.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.4e-06 57.0 136 27.9
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.4e-06 57.0 136 27.9
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.4e-06 57.0 132 34.8
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 4.1e-06 56.2 128 30.5
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 5.4e-06 55.8 44 54.5
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 5.4e-06 55.8 140 30.0
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 7.1e-06 55.5 133 30.8
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 9.2e-06 55.1 243 23.5
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 9.2e-06 55.1 196 29.6
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 9.2e-06 55.1 133 33.1
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 9.2e-06 55.1 51 52.9


User provided reference genes

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